LOCUS BC136497 1144 bp mRNA linear HUM 11-FEB-2009 DEFINITION Homo sapiens visual system homeobox 1, mRNA (cDNA clone MGC:168109 IMAGE:9020486), complete cds. ACCESSION BC136497 VERSION BC136497.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1144) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1144) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 13 Row: G Column: 23 single stranded. FEATURES Location/Qualifiers source 1..1144 /db_xref="H-InvDB:HIT000500513" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:168109 IMAGE:9020486" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_361" /lab_host="DH10B" /note="Vector: pCR4-TOPO; Clone identification sequence tag: AGCACTTT" gene 1..1144 /gene="VSX1" /gene_synonym="KTCN" /gene_synonym="PPD" /gene_synonym="RINX" /db_xref="GeneID:30813" /db_xref="HGNC:HGNC:12723" /db_xref="MIM:605020" CDS 26..1123 /gene="VSX1" /gene_synonym="KTCN" /gene_synonym="PPD" /gene_synonym="RINX" /codon_start=1 /product="visual system homeobox 1" /protein_id="AAI36498.1" /db_xref="GeneID:30813" /db_xref="HGNC:HGNC:12723" /db_xref="MIM:605020" /translation="MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELP APAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLL LADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAK WRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSM GMIRKPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQ ETKKVHPGAGAQGGSNSTALEGPQPGKVGAT" BASE COUNT 217 a 365 c 385 g 177 t ORIGIN 1 ctcgcgcctt gcttgctaag gaaccatgac cggccgggac tcgctttccg acgggcgcac 61 tagcagcagg gcgctggtgc ctggcggttc ccctaggggc tcgcgccccc ggggcttcgc 121 catcacggac ctgctgggct tggaggccga gctgccggcg cccgctggcc caggacaggg 181 atctggctgc gagggtccgg cagtcgcgcc gtgcccgggc ccggggcttg acggctccag 241 cctggcgcgt ggggccctac cgctgggact cggcctcctc tgtggcttcg gcacgcagcc 301 gccggcggcc gctcgagcac cctgcctgct cctagcggac gtgccgttcc tgccgcccag 361 gggccccgag cccgctgccc cgctggctcc cagccgtccg ccgcctgcgc tcggccgcca 421 gaagcgcagc gacagcgtct ccacgtccga tgaggacagc cagtctgaag acaggaatga 481 cctaaaggca tcccccacct tgggcaagag gaagaagcgg cggcacagga cagttttcac 541 tgctcaccag ctggaagagt tggagaaggc attcagcgag gcccactacc ctgatgtgta 601 tgcccgagaa atgctggctg tgaaaactga gctccccgaa gaccggatac aggtctggtt 661 tcaaaaccgc agggccaaat ggcgcaagcg ggagaagcgc tggggcggca gcagcgtgat 721 ggccgagtac gggctgtacg gggccatggt gcgccactgc atcccgctgc cagactccgt 781 gctcaactcc gccgagggcg gcctgctggg ctcctgcgcg ccctggctcc tggggatgca 841 taaaaaatcc atggggatga taaggaagcc aggaagtgaa gataagttgg caggactctg 901 gggctctgac cacttcaaag aaggttctag ccagagtgag tcaggatcac agagaggctc 961 agataaagtg agccctgaga atggcttgga agatgtggct attgacctct ccagctctgc 1021 ccggcaggag accaagaaag tgcaccctgg ggctggtgct caaggaggct ccaactccac 1081 ggcactggag gggccccagc cagggaaggt gggagccaca tgagacccac aggtcccact 1141 gtca //