LOCUS BC112083 2763 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 5, transcript variant
2, mRNA (cDNA clone MGC:138288 IMAGE:8327551), complete cds.
ACCESSION BC112083
VERSION BC112083.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2763)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2763)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 4 Row: g Column: 5.
FEATURES Location/Qualifiers
source 1..2763
/db_xref="H-InvDB:HIT000340212"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:138288 IMAGE:8327551"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_307"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ACGACCGC"
gene 1..2763
/gene="PCDHGC5"
/gene_synonym="PCDH-GAMMA-C5"
/db_xref="GeneID:56097"
/db_xref="HGNC:HGNC:8718"
/db_xref="IMGT/GENE-DB:8718"
/db_xref="MIM:606306"
CDS 75..2711
/gene="PCDHGC5"
/gene_synonym="PCDH-GAMMA-C5"
/codon_start=1
/product="protocadherin gamma subfamily C, 5, isoform 2
precursor"
/protein_id="AAI12084.1"
/db_xref="GeneID:56097"
/db_xref="HGNC:HGNC:8718"
/db_xref="IMGT/GENE-DB:8718"
/db_xref="MIM:606306"
/translation="MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTL
VGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSC
LLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDP
DVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGG
TPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQ
LDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAMEGHC
VIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDISPD
LPFQIKPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISDVNDN
APRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSFVY
VNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLH
PRPGWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTH
TGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLI
HPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPD
FYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQP
TALALEPDAIRSRSNTLRERSQVRGSAPPRATPGGGTGEAARPHKGLNLHPLLSGRLG
RWLRSTRFSGSLDRLRGTRVAD"
BASE COUNT 576 a 816 c 769 g 602 t
ORIGIN
1 tgcattccaa gccctgggtc taccttggag acaggacagc acagacttac tctccacaaa
61 gggacttctg ggtcatgggg cccaagacac tcccacagct cgctgggaaa tggcaagtgc
121 tgtgcatgtt gtccttgtgc tgctggggct gggtgtctgg gcagcttcgt tactcagtgg
181 tggaggagtc tgagccgggg acgctggtgg ggaatgttgc tcaggatctg ggcttaaaga
241 tgacagatct gttgagccgg cggctgcaac tgggctctga ggagaatggg cgctattttt
301 ccctgagctt gatgagtggt gccctggcag tgaatcaaaa gattgaccga gaaagcctat
361 gtggagccag caccagctgc ctgctgccag tgcaggtggt gactgaacac cccctggagc
421 taatccgtgt agaggtagag atcctggatc tcaatgacaa ctctcctagc tttgccaccc
481 ctgagcgaga gatgcgcatc tcagaatcag cagcatctgg ggcacgattc ccactggaca
541 gtgcccagga tccggatgtg ggcaccaata ctgtgagctt ttacactcta agccccaaca
601 gccacttctc tctgaatgtg aagaccctaa aagatgggaa gccattccca gagctggtgc
661 tagagcagca gctggatcgt gaagcccagg caagacatca gctggtgctt actgctgtgg
721 atggggggac cccagcccgc tcagggacca cccttatctc tgtcatcgtg ctggacatca
781 atgataatgc tccaaccttc caatcctcag ttctacgtgt gggaatccca gagaatgcac
841 ccattggtac tctgctgctc cgcctcaatg ccactgatcc agacgagggc accaacggcc
901 aactagacta ttcttttgga gaccacacat ctgaggcagt gcggaacctc tttggcctag
961 accctagcag tggggcaatc catgtgttgg gtcccataga ctttgaggag tcacgtttct
1021 atgaaattca tgcaagagcc cgtgaccagg gacagcctgc catggagggc cactgtgtga
1081 ttcaagtgga tgtgggggat gtcaatgaca atgccccaga ggtgctattg gcctctttgg
1141 ccaaccctgt cctagagagc acaccagtgg gcacagtagt ggggttgttt aatgtgcgag
1201 accgggactc aggtagaaat ggtgaagtga gccttgatat ctctccggac ctgccatttc
1261 agattaagcc ttctgagaac cactactcgc tgctaaccag ccagcctttg gaccgggagg
1321 ccacatccca ctatatcatc gagctgctgg ccagcgatgc tggttcacct tccctacaca
1381 aacatctcac catcaggctc aacatttcag atgtcaatga caatgcaccc cgcttcaacc
1441 agcagcttta cactgcttac atcctagaaa accggcctcc gggctccctt ctttgcactg
1501 tggctgcctc agatccagac actggggata atgcccgcct cacctactcc attgtaggaa
1561 atcaggttca gggagcccca gcctcctcct ttgtgtatgt caacccagag gatggacgga
1621 tctttgccca gcgtaccttt gactatgaat tgctgcagat gctgcagatt gtggtggggg
1681 ttcgagactc cggctctccc ccattgcatg ccaacacatc tctgcatgtg tttgtcctag
1741 acgagaatga taatgcccca gctgtgctgc acccacggcc aggctgggaa cactcagccc
1801 cccagcgtct ccctcgctct gctcctcctg gctccttggt caccaaggtg acagccgtgg
1861 atgctgatgc aggccacaat gcgtggctct cctactcact gttgccacag tccacagccc
1921 caggactgtt cctcgtgtct acacacactg gtgaggtgcg cacagcccgg gccttactgg
1981 aggatgactc tgacacccag caggtggtgg tcctggtgag ggacaatggt gacccttcac
2041 tctcctccac agccacagtg ctgctggttc tggaggatga ggaccctgag gaaatgccca
2101 aatccagtga cttcctcata caccctcctg agcgttcaga ccttaccctt tacctcattg
2161 tggctctagc gaccgtcagt ctcttatccc tagtcacctt cacctttctg tcagctaagt
2221 gccttcaggg aaacgcagac ggggacgggg gtggagggca gtgctgcagg cgccaggact
2281 caccctcccc ggacttctat aagcagtcca gccccaacct gcaggtgagc tcggacggca
2341 cgctcaagta catggaggtg acgctgcggc ccacagactc gcagagccac tgctacagga
2401 cgtgcttttc accggcctcg gacggcagtg acttcacttt tctaagaccc ctcagcgttc
2461 agcagcccac agctctggcg ctggagcctg acgccatccg gtcccgctct aatacgctgc
2521 gggagcggag ccaggtgagg ggctcggcgc cgccccgggc gacccctggg ggcggcactg
2581 gagaagccgc ccgtcctcat aagggattga acttgcatcc actcctctcc ggccggcttg
2641 gtcgctggct gcgctccacc cgattctcgg gatcattgga ccgtttgcgc ggaaccagag
2701 tggccgatta agggatgggg ctccgagcac cgggggtggt ggcgactgtg ggcgagggga
2761 ggt
//