LOCUS BC100975 1362 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens rhomboid, veinlet-like 3 (Drosophila), mRNA (cDNA
clone MGC:119298 IMAGE:40005244), complete cds.
ACCESSION BC100975
VERSION BC100975.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1362)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1362)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 5 Row: g Column: 5.
FEATURES Location/Qualifiers
source 1..1362
/db_xref="H-InvDB:HIT000336388"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119298 IMAGE:40005244"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGTTCCT sequenced from the reverse primer"
gene 1..1362
/gene="RHBDL3"
/gene_synonym="VRHO"
/db_xref="GeneID:162494"
/db_xref="HGNC:HGNC:16502"
CDS 14..1228
/gene="RHBDL3"
/gene_synonym="VRHO"
/codon_start=1
/product="rhomboid, veinlet-like 3 (Drosophila)"
/protein_id="AAI00976.1"
/db_xref="GeneID:162494"
/db_xref="HGNC:HGNC:16502"
/translation="MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDHWKVLFD
QFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQIGYQDFVSLMSNK
RSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCC
PPPWFMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYI
FMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTAPVVG
SSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVWLRFHPSAYPP
CPHPSFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIFVAMYTVFVLFAVFWNIFA
YTLLDLKLPPPP"
BASE COUNT 255 a 403 c 419 g 285 t
ORIGIN
1 accccgtccg gccatgggcg agcaccccag cccgggcccc gcggtggccg cctgcgccga
61 ggcggagcgc atcgaggagc tggaacccga ggccgaggag cggctgcccg cggcgccgga
121 ggaccactgg aaagtcctgt ttgatcagtt tgaccctggg aacacaggct acattagcac
181 aggcaagttc cggagtcttc tggagagcca cagctccaag ctggacccgc acaaaaggga
241 ggtcctcctg gctcttgccg acagccacgc ggatgggcag atcggctacc aggattttgt
301 cagcctaatg agcaacaagc gttccaacag cttccgccaa gccatcctgc agggcaaccg
361 caggctaagc agcaaggccc tgctggagga gaaggggctg agcctctcgc agcgacttat
421 ccgccatgtg gcctatgaga ccctgccccg ggaaattgac cgcaagtggt actatgacag
481 ctacacctgc tgccccccac cctggttcat gatcacagtc acgctgctgg aggttgcctt
541 tttcctctac aatggggtgt cactaggtca atttgtactg caggtaactc atccacgtta
601 cttgaagaac tccctggttt accacccaca gctgcgagca caggtttggc gctacctgac
661 atacatcttc atgcatgcag ggatagaaca cctgggactc aatgtggtgc tgcagctgct
721 ggtgggggtg cccctggaga tggtgcatgg agccacccga attgggcttg tctacgtggc
781 cggtgttgtg gcagggtcct tggcagtgtc tgtggctgac atgaccgctc cagtcgtggg
841 ctcttctgga ggggtgtatg ctctcgtctc tgcccatctg gccaacattg tcatgaactg
901 gtcaggcatg aagtgccagt tcaagctgct gcggatggct gtggccctta tctgtatgag
961 catggagttt gggcgggccg tgtggctccg cttccacccg tcggcctatc ccccgtgccc
1021 tcacccaagc tttgtggcgc acttgggtgg cgtggccgtg ggcatcaccc tgggcgtggt
1081 ggtcctgagg aactacgagc agaggctcca ggaccagtca ctgtggtgga tttttgtggc
1141 catgtacacc gtcttcgtgc tgttcgctgt cttctggaac atctttgcct acaccctgct
1201 ggacttaaag ctgccgcctc ccccctgagg gctggaggcc caaggtcggg gaggggaggg
1261 aaaagcagca cccacaggga gcgcctgcga ggtttcttct catcaccagc tcagctaggc
1321 cgggcagaca aggacagaag actctgggcc actgtaatgt tt
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