LOCUS BC071737 1329 bp mRNA linear HUM 04-DEC-2007
DEFINITION Homo sapiens family with sequence similarity 71, member E1, mRNA
(cDNA clone MGC:88085 IMAGE:5192796), complete cds.
ACCESSION BC071737
VERSION BC071737.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1329)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1329)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: i Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1329
/db_xref="H-InvDB:HIT000264557"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88085 IMAGE:5192796"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1329
/gene="FAM71E1"
/db_xref="GeneID:112703"
/db_xref="HGNC:HGNC:25107"
CDS 359..1054
/gene="FAM71E1"
/codon_start=1
/product="family with sequence similarity 71, member E1"
/protein_id="AAH71737.1"
/db_xref="GeneID:112703"
/db_xref="HGNC:HGNC:25107"
/translation="MGPPLWPDLQEPPPPGTSSQIRSPLLCDVIKPAPHHDVTVRVVP
PPRFLPLLLRPLPSDGDIAMRRDRGPKPALGGAGEVEPGGMAASPTGRPRRLQRYLQS
GEFDQFRDFPIFESNFVQVTRLGEVANEVTMGVAASSPALELPDLLLLAGPAKENGHL
QLFGLFPLKFVQLFVHDKSRCQLEVKLNTSRTFYLQLRAPLKTRDREFGQWVRLLYRL
RFLSASAVPFTQE"
BASE COUNT 337 a 428 c 346 g 218 t
ORIGIN
1 gcctccttcc gtctgtaact cacctaaaga cccaagacct gcgacatccg tagaccgcgc
61 ccgctatgca cagctaaaga gcactcaccc ctcgcgcacc agtcccggcc cggcagccgc
121 tgccccgggc tcgactgggc gctgctaccg ccatcagcaa gagcaggagc agccgggttg
181 ccccagcgct ggctgccgcc atctcggctt cttcccacca gcgaagggac ggctgtgagc
241 caagagccgc ggagcacgcc gggaggaaca ggccgcatcc tgacgcccgt gcgcctgcgc
301 tgggccccgg cacctgcgca ctggcacccg tccgcacctg gggcctgacg tcagcaggat
361 ggggccgccc ctttggcctg atctccagga gccgccccct ccagggacgt catcacaaat
421 caggagcccg ctcttgtgtg acgtcataaa gcccgctccg catcatgacg tcacagtgcg
481 cgtagtcccg ccccctcgct ttctccctct gctcctccgt ccgctcccgt cggacgggga
541 cattgcaatg aggcgggatc gcggccctaa gccggccctg ggtggagctg gcgaggtgga
601 accaggtggg atggcagcct ctcccacggg ccgtcccaga cggctccaac gctacctcca
661 gagcggcgaa ttcgaccagt ttcgggactt ccccatcttt gagagcaact tcgtacaggt
721 gactcggttg ggagaagttg ccaacgaggt caccatgggg gtggcagcct ccagtccagc
781 cctggagctc ccggacctat tgcttctggc cggccctgcc aaggagaacg gacacctgca
841 actcttcggg ctgttcccct tgaagttcgt ccagctcttt gtccacgaca aaagccggtg
901 tcagctcgag gtcaagttga acaccagccg caccttctac ttgcagctgc gggccccact
961 caagacccga gaccgagagt tcggccagtg ggtgcggctg ctctaccgcc tgcgcttcct
1021 ctctgcttct gctgtgccct tcacgcagga gtaagagccc caaggcgtgg aagccagact
1081 tgaccccaag acctctgaac tctggggact ctgagtcttc cagcatcctt caaggtcacc
1141 gaatgaccag agatcaaagt accttgcctc agggccgggc agatgagata ttaaagttaa
1201 taaaggtcag tccattaaga accaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1321 aaaaaaaaa
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