LOCUS BC068473 2264 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens EF-hand domain family, member D2, mRNA (cDNA clone
MGC:87102 IMAGE:5267148), complete cds.
ACCESSION BC068473
VERSION BC068473.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2264)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2264)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: m Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42734435.
FEATURES Location/Qualifiers
source 1..2264
/db_xref="H-InvDB:HIT000263030"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87102 IMAGE:5267148"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2264
/gene="EFHD2"
/gene_synonym="MGC4342"
/gene_synonym="RP3-467K16.3"
/db_xref="GeneID:79180"
/db_xref="HGNC:HGNC:28670"
CDS 51..773
/gene="EFHD2"
/gene_synonym="MGC4342"
/gene_synonym="RP3-467K16.3"
/codon_start=1
/product="EF-hand domain family, member D2"
/protein_id="AAH68473.1"
/db_xref="GeneID:79180"
/db_xref="HGNC:HGNC:28670"
/translation="MATDELATKLSRRLQMEGEGGGETPEQPGLNGAAAAAAGAPDEA
AEALGSADCELSAKLLRRADLNQGIGEPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFK
QYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFREFLLIFRKA
AAGELQEDSGLCVLARLSEIDVSSEGVKGAKSFFEAKVQAINVSSRFEEEIKAEQEER
KKQAEEMKQRKAAFKELQSTFK"
BASE COUNT 452 a 704 c 713 g 395 t
ORIGIN
1 ggtgtgctga gagcaggggc ccggccaagg cgagtgccgc gcgggccacc atggccacgg
61 acgagctggc caccaagctg agccggcggc tgcagatgga gggcgagggc ggcggcgaga
121 ccccggagca gcccgggctg aacggggcag cggcggcggc ggcgggggca cccgacgagg
181 cggccgaggc gctgggcagc gcggactgcg agctgagcgc caagctgctg cggcgcgcag
241 acctcaacca gggcatcggc gagccccagt cgcccagccg ccgcgtcttc aacccctaca
301 ccgagttcaa ggagttctcc aggaagcaga tcaaggacat ggagaagatg ttcaagcagt
361 atgatgccgg gcgggacggc ttcatcgacc tgatggagct aaaactcatg atggagaaac
421 ttggggcccc tcagacccac ctgggcctga aaaacatgat caaggaggtg gatgaggact
481 ttgacagcaa gctgagcttc cgggagttcc tcctgatctt ccgcaaggcg gcggccgggg
541 agcttcagga ggacagcggg ctgtgcgtgc tggcccgcct ctctgagatc gacgtctcca
601 gtgagggtgt caagggggcc aagagcttct ttgaggccaa ggtccaggcc atcaacgtgt
661 ccagccgctt cgaggaggag atcaaggcag agcaggagga aaggaagaag caggcggagg
721 agatgaagca gcggaaagcg gccttcaagg agctgcagtc cacctttaag tagcgggggc
781 tgcagccgac cgccctgctc cggccccagt gtggtgggcg agggtggcgc atgggaggcc
841 gagcctgaat ccttgcctgt gtctgacggg accactacta aaaacctaaa aatatctgtg
901 aatggagcaa gttcaggggt cttatggagg tggcccggcc cctccccgct cccttccact
961 ctgcacgagg ccgccacacc ggcgctggct ccctgcccgg cccggccctc cctggcaatc
1021 cctgggctct cttgcacccc taactgcccc ctgcctgctc cggcactgcc ccaggcccag
1081 ctcctggccc taggtccctc ccagccccat gtgcctgccg cctgccctcc acacatcccc
1141 cccccaaccc gggaacccct gccctcctcc agcaggccgc accgcccctg gggccccctg
1201 ccagcccctt cccaggctgg gagacagcag aagagataga atcagggctg cccccacaga
1261 gtgggaccca aggggctaat tggaggcacg aggggacccc tccccagggc cttttcctcc
1321 tctgcgtctt ccatctactg aaatgggaga gggggtgggg agcttctgtt ctggtgaagg
1381 gacccgggca ggcccccagc accccatgct gacttggaga accccagatc tctggggccc
1441 agccaggcag ggtgtggggg cagctgtgcc aatctacctc acaggcccac cccctgccgg
1501 gcatgccgtg ggatcatggg cagggaaggc tctgggggtc ggagacaccg ctgcttagca
1561 cccccagcca gaacaccctg agggtctcgg ggctctggag agagtggggc gggaggaaga
1621 attggcacct tcctagggaa ggagacgagc gcttcgcctt gattctccga gaagcctccg
1681 agaagtgctt taagtgtgtt tgcatgcgcc aggcggtggg cagcgggggc ctgtccagcc
1741 ctctcccgcc atccttcccc aagtgacgtc cactgccttg tcaccagcga cctgcctgtc
1801 atgcccaccc cctgaggaag catggggacc ctaacaccct ggtgccctgc accagacagg
1861 ccgtggtcag gcccaggcca ccggccgggt tctgccacag cttcccacgt gcttgctgac
1921 atgcgtgtgc ctgtgtgtgg tgtctgttgt tgtgtcgtga aactgtgacc atcactcagt
1981 ccaaacaagt gagtggccct cgaggccaca gttatgcaac tttcagtgtg tgtcataacg
2041 acgtcactgc tttttaaact cgataactct ttattttagt aaaatgccca ggagtcctgg
2101 aagctacgcg gacttgcaga ggttttattt tttggcctta gaatctgcag aaattaggag
2161 gcaccgagcc cagcgcagca gcctcggacc cggattgcgt ttgccttagc ggatatgttt
2221 atacagatga atataaaatg tttttttcaa aaaaaaaaaa aaaa
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