LOCUS BC064525 2890 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens short chain dehydrogenase/reductase family 16C, member 5, mRNA (cDNA clone MGC:70582 IMAGE:5752917), complete cds. ACCESSION BC064525 VERSION BC064525.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2890) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2890) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 139 Row: m Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40807362. FEATURES Location/Qualifiers source 1..2890 /db_xref="H-InvDB:HIT000261444" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:70582 IMAGE:5752917" /tissue_type="Brain, Lung, Testis, adult, pooled whole" /clone_lib="NIH_MGC_115" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2890 /gene="SDR16C5" /gene_synonym="RDH#2" /gene_synonym="RDH-E2" /gene_synonym="RDHE2" /db_xref="GeneID:195814" /db_xref="HGNC:HGNC:30311" /db_xref="MIM:608989" CDS 52..981 /gene="SDR16C5" /gene_synonym="RDH#2" /gene_synonym="RDH-E2" /gene_synonym="RDHE2" /codon_start=1 /product="short chain dehydrogenase/reductase family 16C, member 5" /protein_id="AAH64525.1" /db_xref="GeneID:195814" /db_xref="HGNC:HGNC:30311" /db_xref="MIM:608989" /translation="MSFNLQSSKKLFIFLGKSLFSLLEAMIFALLPKPRKNVAGEIVL ITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQK EGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAF LPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKT TIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMF LKSFLPLKTGLLIADYLGILHAMDGFVDQKKKL" BASE COUNT 896 a 561 c 608 g 825 t ORIGIN 1 ccggcttctc cgcggacagc tagggagagt gtcctgggtg tcagccagaa catgtctttc 61 aacctgcaat catcaaagaa actgttcatt ttcttaggaa aatcactgtt tagtcttctg 121 gaggctatga tttttgcctt actcccaaag ccacggaaga acgttgctgg tgaaatagtc 181 ctcatcacag gtgctggaag tggactcgga aggctcttag ccttgcagtt tgcccggctg 241 ggatctgttc ttgttctctg ggatatcaat aaggagggga atgaggaaac atgtaagatg 301 gctcgggaag ctggagccac aagagtgcac gcctatacct gcgattgcag ccaaaaggaa 361 ggagtgtata gagtagccga ccaggttaaa aaagaagtcg gcgatgtttc catcctaatc 421 aacaatgccg gaatcgtaac aggcaaaaag ttccttgact gtccagatga gcttatggaa 481 aagtcatttg atgtgaattt caaagcacat ttatggactt ataaagcctt tctacctgct 541 atgattgcta atgaccatgg acatttggtt tgcatttcaa gttcagctgg attaagtgga 601 gtaaatgggc tggcagatta ctgtgcaagt aaatttgcag cctttgggtt tgctgaatct 661 gtatttgtag aaacatttgt ccaaaaacaa aaggggatca aaaccacgat tgtgtgcccc 721 ttttttataa aaactggaat gtttgaaggt tgtactacag gctgtccttc tctgttgcca 781 attctggaac caaaatatgc agttgaaaaa atagtagaag ctattctaca agaaaaaatg 841 tacttgtata tgccaaagtt gttatacttc atgatgtttc ttaaaagctt tttgcccctc 901 aagacaggac tgcttatagc tgactatttg ggcatccttc atgcaatgga tggctttgtt 961 gaccaaaaga agaagctcta aagaccaact ctatggctaa ggtcatctga tacacagtgt 1021 tacataatgc gtacttcaat gaagaaaagt atttttgtct gacagtggaa tatatctgga 1081 gaccacaagt accactccta ttctgttatc tggactagaa ttttcaatca atgtgtttga 1141 aaataatgtt gctatcacct atttggttga gttttggttt tttctttttc tttttttttc 1201 caaaaataaa gacagcccat ttttgtcatt tccattacca cagatgtaag aaagtgataa 1261 gccatggcca tgagctgccc tgagctttgg tcgttgggga ggtggctcaa atggagccag 1321 cggctgtggt tgacctgcct tggggagcag ggctgagggg cgaagaggac atgtggatat 1381 ccagccagaa tgccctctct ccagaggaca cacagctctg gatttctacc cccttgctat 1441 cctctctggc cattttgaac ctgtaccacc taatgtagaa aaggcccgcc tccagtgccc 1501 ttctttccaa aacagctaca caaatgcttc tgaatgccct ggatacgcag accgagtggc 1561 agtctggcta aaggcccatc cagcactatt gtgcccaaga gccttaccgg gcattccctg 1621 aagccccctc ataggcagtg atcctagacc aaactcttaa atagaatcac ttttgtttcc 1681 tagaagagat caaagagtgg ttgcttctta ctttgaagat gaaattatac caagttaggt 1741 tttttgctat ctattgatcc aaaaaatata ttcgtgcaat taaagttaag tgttcaactt 1801 agtatttcaa gttgggattc aggttgaggc attttcctgc agaatgggca attttatgca 1861 tttatattca tcagtgctgc cctcactttg gatctattgt attcttacag tttaatcaac 1921 tggcaaagtg ctttcatgct ttggagatta actataaaag caagattaag aaaaatatgt 1981 taattaccat atccctggaa ctccttctca ggctggtggg ggcagccttg caagagaaac 2041 agcagccttt gtctcttccc tcttgtgggg agcaaggagg ggatgagcgg taccttggga 2101 gacccggtaa aagtctaaag aattgagaat ttgactatct tgggggtaaa atgctgtcat 2161 aggggcagca gtctcagggg gtgtaaactc tggaatccac tatggtttac cttgagtggc 2221 ctgcacgaac atgacagccc tgatctgtat ttcctttcca ttcagaaaac cttaaaaaaa 2281 aaaaacttgt tttatgataa tattataaca atcataacta acatttactg tgcccggcag 2341 caaattaagt atttgacaaa cattatttca ttaaacgaga ctgtcaatca ttactcaaag 2401 aatgatgaag gtatttggtg tatgccaaag aataaaggcg ttttatttca cagtgacatc 2461 ttattccact gtagatgtat actgagagga tcaaaggccc tctcagagtc acccactgat 2521 gttccaaatc cttggttaac aaggttaatt aagagagaag cacaatattg ctgtaatatt 2581 acaattccag aagcgtatct tctagggtcc tgtctattta gttaaagaat aaagctcaga 2641 ctcttcgggg attcagtaca acaaaggtcc aggagcactg caggcatcct ccacatcata 2701 acagcattaa tagcaattat ttctaattgg agtgcatctt ggctggactg cgacaaaggc 2761 ctgaaattca attgtggttt taaaataccc ataaaattgt ctaaacaaat tcaaaaaaaa 2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2881 aaaaaaaaaa //