LOCUS BC064486 4384 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens programmed cell death 11, mRNA (cDNA clone
IMAGE:5930738), partial cds.
ACCESSION BC064486
VERSION BC064486.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4384)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4384)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70980548.
FEATURES Location/Qualifiers
source 1..4384
/db_xref="H-InvDB:HIT000261406"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5930738"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..>4384
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="NFBP"
/db_xref="GeneID:22984"
/db_xref="HGNC:HGNC:13408"
CDS 81..>4384
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="NFBP"
/codon_start=1
/product="PDCD11 protein"
/protein_id="AAH64486.1"
/db_xref="GeneID:22984"
/db_xref="HGNC:HGNC:13408"
/translation="MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKR
KKSQKGPAKTKKLKIEKRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISL
PNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITD
RGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLL
KAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLN
NLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCV
HPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLA
YARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDI
EPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVL
LCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ
GLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAG
HSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHW
LQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIK
DYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR
LSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEV
LEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQDL
VNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQV
GQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKK
HTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTV
TARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQY
QAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALR
ATVVGPDSSKTFLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFH
MSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLT
ARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKKKKK"
BASE COUNT 1144 a 1076 c 1185 g 979 t
ORIGIN
1 ctggtctccg cgtgtgtgag taccgcggcg cgaggttagt ggtagctggg tgcagacgcc
61 gtggcgctgg agacccaaac atggcaaacc tggaagaaag cttcccccga ggaggtacaa
121 gaaagatcca caaaccagag aaagctttcc agcagtcagt tgaacaagac aacttatttg
181 atatttctac tgaagaggga tccaccaaaa gaaaaaagag ccagaagggg ccagcaaaaa
241 caaaaaagtt gaaaatcgaa aagagagaaa gcagcaagtc cgcaagagag aagtttgaaa
301 tccttagtgt tgagtccctg tgtgagggaa tgcgtatttt gggttgcgtg aaagaggtga
361 atgaactgga actggtgatt agtctcccca atggcctcca gggctttgtg caagtcactg
421 aaatctgtga tgcctacacc aaaaagctga atgagcaggt gacacaagaa caacctctga
481 aggacctact tcacttgcct gaacttttct cacctggaat gctggtaaga tgtgtggtga
541 gcagtctggg catcacagac aggggcaaga agagtgtcaa gctgtctctg aaccccaaaa
601 atgtcaacag agtgctgagt gctgaggccc tgaagcctgg catgctactt acaggtaccg
661 tatccagcct ggaagaccat ggctacctag tggacattgg tgttgatggg accagagctt
721 ttctgccact gctgaaagcc caggagtaca tcagacagaa gaacaaaggt gctaaactaa
781 aggtgggtca gtacctgaac tgcattgttg aaaaggtgaa aggcaacgga ggagttgtta
841 gtctgtctgt tggtcactca gaggtttcta cggccattgc tactgaacag cagagctgga
901 accttaataa cttgctacca ggactggtgg tcaaagctca ggtacagaag gtgactccat
961 ttggccttac gctaaacttc ctcacattct tcacgggcgt ggttgacttt atgcacctgg
1021 atcccaagaa agctggaaca tatttctcaa atcaggcagt gagggcctgc atcctttgcg
1081 tccatcctcg aaccagagtt gtgcacctga gcctgcgccc catcttccta cagcctggac
1141 gcccactcac ccgactctct tgccagaacc ttggagcagt gctggatgat gttcctgtcc
1201 agggtttttt caaaaaggct ggggccacct ttaggctgaa ggatggggtt ctggcctatg
1261 cccggctcag ccatctctct gattctaaga acgtcttcaa tcctgaggcc ttcaagccag
1321 ggaacactca caagtgtaga attattgact acagccaaat ggatgaactg gccttgctct
1381 ctctacgaac gtctattatt gaagctcagt accttagata tcatgacatc gaacctgggg
1441 cagtggtaaa gggcacagtg ctaaccataa agtcatatgg gatgctggtg aaggtgggcg
1501 agcagatgag gggcctggta cctcccatgc acctggctga catcctgatg aagaatccgg
1561 agaagaagta ccacatcggg gatgaggtca agtgccgggt tttgctttgt gaccctgaag
1621 ccaagaagct gatgatgacc ctgaaaaaaa ccctgattga gtccaaacta cctgtcatta
1681 cctgctatgc cgatgccaag cctggtctgc agacacatgg cttcatcatc agggtcaagg
1741 actatggctg cattgtgaag ttctacaaca atgtgcaggg actggtgccc aagcatgagc
1801 tcagtactga gtatatccct gacccggaga gagtttttta cactggccag gtggtgaagg
1861 ttgtcgtatt gaactgtgag ccatccaaag agaggatgct cttatccttc aagctgtcga
1921 gtgatccaga gccaaagaaa gagcctgcag gacacagtca gaagaaagga aaagccatta
1981 acattgggca gttggtagat gtgaaggttt tagagaagac caaagatggg ctggaggtgg
2041 ctgtcctgcc ccacaacatc cgtgctttcc tccccacatc tcatctgtcg gaccacgttg
2101 ccaacggccc attgttacat cattggctcc aggcaggtga catccttcac cgagtcctgt
2161 gtctgagcca gagcgagggg cgtgttcttc tttgcaggaa gccagccttg gtctccacag
2221 tagaaggtgg ccaggatccc aagaacttct cagaaatcca tcctggaatg ctgctcattg
2281 gttttgtgaa gagcatcaag gactatggcg tgttcatcca gttcccctca ggtcttagcg
2341 gactggcccc aaaagctatc atgagtgaca aatttgtgac ctccacaagt gaccactttg
2401 ttgagggcca gacagtagcg gcaaaggtga ccaatgtgga tgaggagaag cagcggatgc
2461 tgctgtcact gcggctgtcg gactgtggtc tgggggactt ggctatcacc agcctcctcc
2521 tcctgaatca gtgcctggag gagctgcagg gcgtgcgcag ccttatgagc aaccgagact
2581 ctgtgttgat ccagacgctg gccgagatga ccccaggaat gttccttgac ctagtggtgc
2641 aggaggtgtt ggaagatggc tctgtggtat tcagtggggg tccagtgccc gacctggtcc
2701 tgaaagccag cagataccat cgcgcagggc aggaggtgga atctgggcag aaaaagaagg
2761 ttgttatctt aaatgttgat cttttgaagt tggaagtgca cgtttccctt caccaggact
2821 tggtgaatag aaaagctaga aagctgagga aaggcagcga acaccaggcg attgtgcagc
2881 acttggagaa gtcctttgcc attgcctcct tggtagagac gggccacctg gcagctttct
2941 ccctgacctc tcacctcaac gacaccttcc gctttgactc agagaaattg caggtgggac
3001 agggtgtctc cctaaccctc aagaccacag aaccaggagt gactggcctt cttttggctg
3061 tggaggggcc ggctgccaag aggaccatga ggccgaccca gaaggactct gagacagttg
3121 atgaggatga agaagtggat ccagctctga ctgtagggac cataaagaag cacaccctct
3181 ccatcgggga catggtcaca gggactgtca agtccattaa gcctacccat gtggttgtga
3241 ctctggaaga tggcattatt ggctgtatcc atgcctccca cattctagat gatgttccag
3301 agggcacctc tcctactacc aagctgaagg ttgggaagac ggtcactgcc cgagtgattg
3361 gcgggcgaga catgaagaca ttcaagtatc tcccaataag tcaccccaga ttcgttcgaa
3421 ccatcccgga gctgagtgtt cggccaagtg agctggagga tggccacact gctcttaaca
3481 ctcactctgt tagccccatg gagaagatta aacagtacca ggccggccag actgttactt
3541 gcttcttaaa gaaatacaat gtggtgaaga aatggcttga ggtggagatt gccccagaca
3601 tccgggggag aattccctta ttgctcactt ctctgagctt caaggttctg aagcatccag
3661 ataagaagtt ccgggttggc caggccctga gggccaccgt tgttggccca gattcctcca
3721 agaccttctt atgtctgtcc ctcacaggtc ctcacaagct tgaggaaggg gaagtggcca
3781 tgggccgagt ggtgaaggtg actcccaacg aggggctgac cgtctccttc ccctttggga
3841 agataggaac agtcagtata tttcacatga gtgactccta ctccgagacg cccctggaag
3901 acttcgtccc ccagaaggtt gtcagatgtt acatcctgtc cactgcagac aacgtattga
3961 ctttgtcgct gcgatcatcc agaacaaacc cggagacgaa aagcaaagta gaagatccag
4021 agattaactc catccaggac attaaggaag ggcagcttct gaggggctat gtagggtcca
4081 tccagccaca cggtgtgttc tttcgccttg gcccctccgt tgtgggtttg gctcggtact
4141 cccatgtctc ccagcacagc ccgtccaaga aagcccttta taacaaacac ctccctgaag
4201 ggaagctgct cacagccagg gtcctacgcc ttaaccacca gaagaacctg gtagagctgt
4261 ctttcctccc cggagacact gggaagccag acgtgctttc tgcttccttg gaagggcaac
4321 ttacaaagca agaggagagg aaaacagagg ctgaggagag agaccaaaaa aaaaaaaaaa
4381 aaaa
//