LOCUS BC061824 1858 bp mRNA linear ROD 09-JUN-2008
DEFINITION Rattus norvegicus tripartite motif-containing 63, mRNA (cDNA clone
MGC:72330 IMAGE:5599072), complete cds.
ACCESSION BC061824
VERSION BC061824.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 1858)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1858)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Jeff Green/Paturu Kondaiah, NCI.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 137 Row: g Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18266713.
FEATURES Location/Qualifiers
source 1..1858
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:72330 IMAGE:5599072"
/tissue_type="Prostate, pool of NCI_CGAP_Pr30, 40, 41 and
NCI_CGAP_Pr29, 39, 42"
/clone_lib="NCI_CGAP_Pr50"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1858
/gene="Trim63"
/gene_synonym="Murf"
/gene_synonym="Murf1"
/gene_synonym="Rnf28"
/db_xref="GeneID:140939"
/db_xref="RGD:619964"
CDS 82..1137
/gene="Trim63"
/gene_synonym="Murf"
/gene_synonym="Murf1"
/gene_synonym="Rnf28"
/codon_start=1
/product="tripartite motif-containing 63"
/protein_id="AAH61824.1"
/db_xref="GeneID:140939"
/db_xref="RGD:619964"
/translation="MDYKSGLIPDGNAMENLEKQLICPICLEMFTKPVVILPCQHNLC
RKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENII
DIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSLCKVFGAHQACEVAPLQ
SIFQGQKTELSNCISMLVAGNDRVQTIISQLEDSCRVTKENSHQVKEELSHKFDALYA
ILDEKKSELLQRITQEQEEKLDFIEALILQYREQLEKSTKLVETAIQSLDEPGGATFL
LSAKPLIKSIVEASKGCQLGKTEQGFENMDYFTLNLEHIAEALRAIDFGTDEEEEFTE
EEEEEDQEEGVSTEGHQ"
BASE COUNT 503 a 426 c 528 g 401 t
ORIGIN
1 ggaagacaaa gaggatccga gtgggatccc ttccactcgg tgtgacgcag gtggaagaga
61 cagtcgcagt ttcgaagcaa tatggattat aaatctggct tgattccgga cggaaatgct
121 atggagaacc tggagaagca gctcatctgc cccatctgcc ttgagatgtt taccaagcct
181 gtggtcatcc tgccctgcca gcacaacctc tgccggaagt gtgccaacga catcttccag
241 gctgccaatc cctactggac caaccgcggt ggctcggtgt ccatgtctgg aggtcgtttc
301 cgctgcccct cgtgccgcca tgaagtgatc atggaccggc atggggtgta cggtctgcag
361 aggaacctgc tggtggagaa catcatcgac atctacaagc aggaatgctc cagtcggccc
421 ctgcagaaag gcagccaccc gatgtgcaag gaacacgaag acgagaaaat caacatctac
481 tgtctcacgt gcgaggtgcc tacttgctcc ttgtgcaagg tgttcggggc tcaccaggcc
541 tgtgaagttg cccccttaca aagcatcttc caaggacaga agactgaact gagcaattgc
601 atctccatgc tggtggcagg gaacgaccga gttcagacta tcatctcgca gctggaggac
661 tcctgccgag tgaccaagga aaacagccac caggtgaagg aggaactgag ccacaagttt
721 gacgccctct acgccatcct ggacgagaag aagagtgagc tgctgcagcg gatcactcag
781 gagcaggagg agaagctgga cttcatcgag gccctgatcc tccagtaccg agagcagttg
841 gaaaagtcga ccaagcttgt ggaaacagcc atccagtccc tggatgagcc cggaggggcc
901 accttcctct tgagtgccaa gccgctcatc aagagcattg tagaagcttc caagggctgc
961 cagctgggga agacagaaca aggctttgag aacatggact actttactct gaatttagaa
1021 cacatagcag aggccttgag ggccattgac tttgggacag atgaggagga ggagtttact
1081 gaagaggagg aggaggagga tcaagaagag ggcgtgtcca cagagggaca ccaatgaaga
1141 actggatgag tgagacgccc tctggatgca gagatggggg aggggcggga caggcccatc
1201 tcgggatggg gttagggctc cttgggggca ccatagggaa gtgtgtcttc tctctgctca
1261 gagagcaggg actagcatag aagccccacc attgtgtcca gcagctgctg aaacacgatt
1321 ggaaatgtat ccaaaaatgt cccaggacac ttttttacgt tggtgcaaaa tgaaatattt
1381 tgtatgtttt taaaatgtga tttttgtata aacttgtata tgtatgccaa tttggtgctt
1441 tttgtacaag aacttttgta tgatcatgcc tggtcattgt gtgaccagcg attgtcacaa
1501 agggggaagg aagccaagtt cattgagctg cccacttcct ttccttggcg ggagggttgg
1561 gtctcactca aaggcctaga aaggggcaat gtactgtact tcagtaccca tccccaaaca
1621 tggggagagg actgaatttg tgttatatgt tgttttaata aatgcagaag gggctgggta
1681 ttggggggtg cacacccttt gatcccagca ctctggaggc agaggcagtt ggatctctat
1741 gagttcgagg ctagcctggt ctacatggag agttccagac cagccagggc aacatagaga
1801 gactctctgt ctcaaaaata aaaaaatgaa aaagaataaa aaataaaaaa aaaaaaaa
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