LOCUS BC057245 2445 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens zinc finger protein 790, mRNA (cDNA clone MGC:62100
IMAGE:6712908), complete cds.
ACCESSION BC057245
VERSION BC057245.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2445)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2445)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: n Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46047454
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2445
/db_xref="H-InvDB:HIT000259670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:62100 IMAGE:6712908"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_128"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2445
/gene="ZNF790"
/db_xref="GeneID:388536"
/db_xref="HGNC:HGNC:33114"
CDS 124..2034
/gene="ZNF790"
/codon_start=1
/product="ZNF790 protein"
/protein_id="AAH57245.1"
/db_xref="GeneID:388536"
/db_xref="HGNC:HGNC:33114"
/translation="MAHLMMFRDVAVDFSQEEWECLDLEQRDLYRDVMLENYSNMVSL
GFCIYQPEAFSLLEKGKEPWKILRDETRGPCPDMQSRCQTKKLLPKNGIFEREIAQLE
IMRICKNHSLDCLCFRGDWEGNTQFQTLQDNQEECFKQVIRTCEKRPTFNQHTVFNLH
QRLNTGDKLNEFKELGKAFISGSDHTQHQLIHTSEKFCGDKECGNTFLPDSEVIQYQT
VHTVKKTYECKECGKSFSLRSSLTGHKRIHTGEKPFKCKDCGKAFRFHSQLSVHKRIH
TGEKSYECKECGKAFSCGSDLTRHRRIHTGEKPYECNECRKAFSQRSHLIKHQRIHTG
EKPYECKECGKAFTRGSHLTQHQRIHTGEKSHECKECGKAFIRGSNLAQHQNVHVGRK
PYKCEKCGKAYIWSSHLARHQRIHTGRKPYECKQCGKTFTWASYLAQHEKIHNERKSY
ECKECGKTFLHGSEFNRHQKIHTGERNYECKECGKTFFRGSELNRHQKIHTGKRPYEC
EECGKAFLWGSQLTRHQRMHTGEEPYVCKECGKSFIWGSQLTRHKKIHTDAEPYGCKK
SSHIFSHHSYFTEQKIHNSANLCEWTDYGNTFSHESNFAQHQNIYTFEKSYEFKDFEK
AFSSSSHFISLL"
BASE COUNT 844 a 417 c 529 g 655 t
ORIGIN
1 ggggaaaaaa gatcgcggaa ccttccacca tcaagggacc gcagggccgg ctctgctttc
61 ccagcacgct gcctcaccaa gaaagaatcc agagaaggac tggtggactt ggaatgttaa
121 gtcatggccc atttgatgat gttcagggat gtggctgtag atttctctca ggaggagtgg
181 gagtgcctgg acctggaaca gagggattta tatagagatg tgatgttgga gaactacagc
241 aacatggtct cactgggttt ttgcatttat cagccagaag cgttctcttt attggagaaa
301 gggaaagagc cctggaagat tttgagggat gagacaagag gaccttgccc agacatgcag
361 tcgaggtgtc agaccaagaa gttattacca aaaaatggca tttttgagag agaaatagcc
421 caattggaaa taatgagaat ttgtaaaaac cacagccttg actgtttatg ttttagaggt
481 gactgggaag gcaacactca gtttcaaaca cttcaagata atcaagagga atgcttcaag
541 caggtgatac gcacctgtga aaaaaggccc acttttaacc agcatacagt gtttaatcta
601 caccagagac ttaatacagg agacaaactg aatgaattta aagaactggg gaaagccttt
661 atttctggtt cagatcatac tcaacatcag ttaattcaca caagtgagaa attctgtgga
721 gataaagaat gtgggaatac ctttcttcct gattcagaag ttattcaata tcagacagtt
781 cacactgtta agaaaacata tgaatgtaaa gaatgtggga agtcttttag tttacgttcg
841 agtcttactg gtcataagag aattcatacc ggtgagaaac cttttaaatg taaggattgt
901 gggaaagcct ttagatttca ttcacaactt agtgtccata agcgaattca tactggtgag
961 aaatcttatg aatgtaagga atgtgggaag gcctttagtt gtggctcaga tcttactcga
1021 catcggagaa ttcatactgg tgaaaaaccc tatgaatgta atgaatgtag aaaggccttt
1081 agtcagcgat cacatcttat taaacatcag agaattcaca ctggtgaaaa accttatgaa
1141 tgtaaggagt gtgggaaagc ttttactcgt ggatcacacc taactcagca tcagagaatt
1201 catactggtg agaaatctca tgagtgtaag gaatgtggaa aagcctttat tcgtggttca
1261 aatcttgctc aacatcagaa tgttcatgtt ggtaggaaac cttataaatg tgagaaatgt
1321 gggaaagcct atatttggag ctcacacctt gctcgacatc agcgaattca tactggcagg
1381 aaaccttatg aatgtaagca atgcgggaag acttttactt gggcttcgta tcttgctcaa
1441 catgagaaaa ttcacaatga gaggaaatcc tatgaatgta aggaatgtgg aaagaccttt
1501 cttcatggct cagagtttaa tcgacatcag aaaattcata ctggtgagag aaactatgaa
1561 tgtaaggaat gtggaaagac cttttttcgt ggttcagaac ttaatcgaca ccagaaaatt
1621 catactggaa agaggccata tgaatgtgaa gaatgtggaa aagcctttct ctggggttca
1681 caacttactc gacatcagag aatgcatact ggtgaggaac cttacgtatg taaagaatgt
1741 gggaaatctt ttatctgggg ttcacagctt acacgacata agaaaattca tactgatgca
1801 gaaccttatg ggtgcaagaa aagtagccac atctttagtc accattcata ttttactgaa
1861 caaaaaattc ataatagtgc aaatctctgt gaatggacag actatgggaa cacctttagt
1921 catgagtcaa actttgctca acaccagaat atttacactt ttgagaaatc ctatgaattt
1981 aaagattttg agaaagcatt ttcttcaagc tctcacttca tttcactctt gtgaaatatt
2041 atataaaagt gtaggaaggg ctttattcat gactcattaa ttgatgtcat ttattttttt
2101 ctcttgagga acaccacaaa tgtaagtaat attggaaggc attttaacag agcacacatc
2161 cagcagcagc agcagcagca gcagagaatt catcatgcaa tcaatatagg aaagaaatta
2221 ctgatcagtt atcaattgca gaatatcagg gtaaaatttt atgagatagc atgaattctt
2281 tttgaatcac ttgaacccgg gagacagagg ttgcagtgag ctgagatcgc accactgcac
2341 tccagcctgg gcgacagagc gagactccag ctcaaaaaaa ataaataaaa attaaaaaat
2401 aaaataaaat aaaaaattca aaaaaaaaaa aaaaaaaaaa aaaaa
//