LOCUS BC056687 1387 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens serologically defined colon cancer antigen 1, mRNA
(cDNA clone IMAGE:6737450), partial cds.
ACCESSION BC056687
VERSION BC056687.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1387)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1387)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction, Similarity but not identity
to protein.
FEATURES Location/Qualifiers
source 1..1387
/db_xref="H-InvDB:HIT000259583"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6737450"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_127"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>1387
/gene="SDCCAG1"
/gene_synonym="FLJ10051"
/gene_synonym="NY-CO-1"
/db_xref="GeneID:9147"
CDS 109..>1387
/gene="SDCCAG1"
/gene_synonym="FLJ10051"
/gene_synonym="NY-CO-1"
/codon_start=1
/product="SDCCAG1 protein"
/protein_id="AAH56687.1"
/db_xref="GeneID:9147"
/translation="MRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPK
NMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLT
DYEYVILNILRFRTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELL
KRVLNPLLPYGPALIEHCLLENGFSGNVKVDEKLETKDIEKVLVSLQKAEDYMKTTSN
FSGKGYIIQKREIKPCLEADKPVEDILTYEEFHPFLFSQHSQCPYIEFESFDKAVDEF
YSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQI
VDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLRNPYL
LSEEEDDDVDGDVNVEKNETEPSKKKKKKKKKNM"
misc_feature 112..1119
/gene="SDCCAG1"
/gene_synonym="FLJ10051"
/gene_synonym="NY-CO-1"
/note="FbpA; Region: Fibronectin-binding protein A
N-terminus (FbpA). This family consists of the N-terminal
region of the prokaryotic fibronectin-binding protein.
Fibronectin binding is considered to be an important
virulence factor in streptococcal infections. Fibronectin
is a dimeric glycoprotein that is present in a soluble
form in plasma and extracellular fluids"
/db_xref="CDD:pfam05833"
BASE COUNT 492 a 230 c 303 g 362 t
ORIGIN
1 ggggagagga aattgcggta gtgaccctcg ggcctcgcca tgaagagccg ctttagcacc
61 attgacctcc gcgccgtact cgcggagctg aatgctagct tgctaggaat gagagtaaac
121 aatgtttatg atgtggataa taagacatac cttattcgtc ttcaaaaacc ggactttaaa
181 gctacacttt tacttgaatc tggcatacga attcatacaa cagaatttga gtggcctaag
241 aatatgatgc cgtctagttt tgccatgaag tgccgaaaac atttgaagag tcggagatta
301 gtcagtgcaa aacagcttgg tgtggataga attgtagatt ttcaatttgg aagtgatgaa
361 gctgcttacc atttaatcat tgagctctat gataggggga acattgttct tacagattat
421 gagtacgtaa ttttaaatat tctaaggttt cgaactgatg aggcagatga tgttaaattt
481 gctgttcgtg aacgctatcc acttgatcat gctagagctg ctgaaccttt gcttactttg
541 gaaaggttga ctgaaatagt agccagcgca cctaagggtg aactactgaa gagggtgctt
601 aacccattac ttccctatgg accagctctc attgaacact gtcttttaga aaatggattc
661 tcgggtaatg tcaaagtgga tgaaaaactt gaaactaaag atattgaaaa agtacttgtt
721 tctctgcaga aagcagaaga ctatatgaaa acaacatcca acttcagtgg gaagggatat
781 atcattcaga aaagagaaat aaaaccatgc ttggaagcag ataaaccagt tgaagacata
841 ctgacgtatg aggaatttca tcctttcttg ttttctcaac attcacaatg tccatatata
901 gaatttgaat catttgacaa ggcggtggat gaattttatt ccaagataga aggccagaaa
961 attgacttaa aagctttaca acaggaaaag caagcattga agaaattaga taatgttcga
1021 aaggatcacg aaaacagatt ggaagctctt cagcaggctc aggaaataga caaactgaaa
1081 ggagagctca tagaaatgaa cctacaaata gttgacagag ccattcaggt agttcgaagt
1141 gctttagcta accagataga ttggacagaa attgggttaa ttgtgaaaga agcccaggct
1201 caaggagacc ctgttgcaag tgcaatcaaa gaattaaaac tacaaacaaa ccatgttaca
1261 atgctgctaa gaaatccata cttgttatca gaggaggaag atgatgatgt tgatggtgac
1321 gtcaatgttg agaaaaatga aactgaacca tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aacatgt
//