LOCUS BC051738 5102 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SLIT and NTRK-like family, member 1, mRNA (cDNA clone
MGC:51091 IMAGE:4816570), complete cds.
ACCESSION BC051738
VERSION BC051738.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: e Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40217816.
FEATURES Location/Qualifiers
source 1..5102
/db_xref="H-InvDB:HIT000099387"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51091 IMAGE:4816570"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5102
/gene="SLITRK1"
/gene_synonym="KIAA1910"
/gene_synonym="RP11-395N17.1"
/db_xref="GeneID:114798"
/db_xref="HGNC:HGNC:20297"
/db_xref="MIM:609678"
CDS 788..2878
/gene="SLITRK1"
/gene_synonym="KIAA1910"
/gene_synonym="RP11-395N17.1"
/codon_start=1
/product="SLIT and NTRK-like family, member 1"
/protein_id="AAH51738.1"
/db_xref="GeneID:114798"
/db_xref="HGNC:HGNC:20297"
/db_xref="MIM:609678"
/translation="MLLWILLLETSLCFAAGNVTGDVCKEKICSCNEIEGDLHVDCEK
KGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVPGAF
LGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLI
LNDNLISTLPANVFQYVPITHLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTC
DLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPA
QEETFAPGPLPTPFKTNGQEDHATPGSAPNGGTKIPGNWQIKIRPTAAIATGSSRNKP
LANSLPCPGGCSCDHIPGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRK
SHFVDYKNLILLDLGNNNIATVENNSFKNLLDLRWLYMDSNYLDTLSREKFAGLQNLE
YLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGVSLSKLSLHNNYFMY
LPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCETPVNFFR
KDFMLLSNDEICPQLYARISPTLTSHSKNSTGLAETGTHSNSYLDTSRVSISVLVPGL
LLVFVTSAFTVVGMLVFILRNRKRSKRRDANSSASEINSLQTVCDSSYWHNGPYNADG
AHRVYDCGSHSLSD"
BASE COUNT 1346 a 1239 c 1156 g 1361 t
ORIGIN
1 agtgctagta agcgagagcg agagcacaga aaagaaaaaa aaaagcctta agaggaccga
61 aggggaggaa aggaaaagga tggacaacca caaaacgcag cgattgcgga aattttccag
121 cgccattggc tgggcagcgt gagtccttcg gtcgggcgtg atttcagcac cgggggaact
181 ggacagcacc tcggggggac ttctgggcaa cccgcaacca cagcaagaac tccaccagca
241 gcctcaacaa cagaagccgc ggaaaaccct gctttgtatc agagaggcaa ggtcagtccg
301 acgcacagcc atgcacaggc agtgcgcctg tactacgctg caaaccctct gcttgtttct
361 ctaacatgca cttgcttcta attactagca ttgtttcatt tctgatcagt gaagatcagt
421 agatgagatt ctgtaagggt gtacttttaa tttatatgta tatatttaac ttctttttct
481 gttattttta aagtgttgtg ggggagtggg gtttttttcc tacttttttt tttttttttt
541 tttctttgct tgccttgcac tacgtgcctg gatagtttgt ggatataatt attgactggc
601 gtctgggcta ttgcagtgcg ggggggttag ggaggaagga atccaccccc acccccccaa
661 acccttttct tctcctttcc tggcttcgga cattggagca ctaaatgaac ttgaattgtg
721 tctgtggaga gcaggatggt cgctgttact ttgtgatgag atcggggatg aattgctcgc
781 tttaaaaatg ctgctttgga ttctgttgct ggagacgtct ctttgttttg ccgctggaaa
841 cgttacaggg gacgtttgca aagagaagat ctgttcctgc aatgagatag aaggggacct
901 acacgtagac tgtgaaaaaa agggcttcac aagtctgcag cgtttcactg ccccgacttc
961 ccagttttac catttatttc tgcatggcaa ttccctcact cgacttttcc ctaatgagtt
1021 cgctaacttt tataatgcgg ttagtttgca catggaaaac aatggcttgc atgaaatcgt
1081 tccgggggct tttctggggc tgcagctggt gaaaaggctg cacatcaaca acaacaagat
1141 caagtctttt cgaaagcaga cttttctggg gctggacgat ctggaatatc tccaggctga
1201 ttttaattta ttacgagata tagacccggg ggccttccag gacttgaaca agctggaggt
1261 gctcatttta aatgacaatc tcatcagcac cctacctgcc aacgtgttcc agtatgtgcc
1321 catcacccac ctcgacctcc ggggtaacag gctgaaaacg ctgccctatg aggaggtctt
1381 ggagcaaatc cctggtattg cggagatcct gctagaggat aacccttggg actgcacctg
1441 tgatctgctc tccctgaaag aatggctgga aaacattccc aagaatgccc tgatcggccg
1501 agtggtctgc gaagccccca ccagactgca gggtaaagac ctcaatgaaa ccaccgaaca
1561 ggacttgtgt cctttgaaaa accgagtgga ttctagtctc ccggcgcccc ctgcccaaga
1621 agagaccttt gctcctggac ccctgccaac tcctttcaag acaaatgggc aagaggatca
1681 tgccacacca gggtctgctc caaacggagg tacaaagatc ccaggcaact ggcagatcaa
1741 aatcagaccc acagcagcga tagcgacggg tagctccagg aacaaaccct tagctaacag
1801 tttaccctgc cctgggggct gcagctgcga ccacatccca gggtcgggtt taaagatgaa
1861 ctgcaacaac aggaacgtga gcagcttggc tgatttgaag cccaagctct ctaacgtgca
1921 ggagcttttc ctacgagata acaagatcca cagcatccga aaatcgcact ttgtggatta
1981 caagaacctc attctgttgg atctgggcaa caataacatc gctactgtag agaacaactc
2041 tttcaagaac cttttggacc tcaggtggct atacatggat agcaattacc tggacacgct
2101 gtcccgggag aaattcgcgg ggctgcaaaa cctagagtac ctgaacgtgg agtacaacgc
2161 tatccagctc atcctcccgg gcactttcaa tgccatgccc aaactgagga tcctcattct
2221 caacaacaac ctgctgaggt ccctgcctgt ggacgtgttc gctggggtct cgctctctaa
2281 actcagcctg cacaacaatt acttcatgta cctcccggtg gcaggggtgc tggaccagtt
2341 aacctccatc atccagatag acctccacgg aaacccctgg gagtgctcct gcacaattgt
2401 gcctttcaag cagtgggcag aacgcttggg ttccgaagtg ctgatgagcg acctcaagtg
2461 tgagacgccg gtgaacttct ttagaaagga tttcatgctc ctctccaatg acgagatctg
2521 ccctcagctg tacgctagga tctcgcccac gttaacttcg cacagtaaaa acagcactgg
2581 gttggcggag accgggacgc actccaactc ctacctagac accagcaggg tgtccatctc
2641 ggtgttggtc ccgggactgc tgctggtgtt tgtcacctcc gccttcaccg tggtgggcat
2701 gctcgtgttt atcctgagga accgaaagcg gtccaagaga cgagatgcca actcctccgc
2761 gtccgagatt aattccctac agacagtctg tgactcttcc tactggcaca atgggcctta
2821 caacgcagat ggggcccaca gagtgtatga ctgtggctct cactcgctct cagactaaga
2881 cccgaacccc aataggggag ggcagaggga aggcgataca tccttcccca ccgcaggcac
2941 cccgggggct ggaggggcgt gtacccaaat ccccgcgcca tcagcctgga tgggcataag
3001 tagataaata actgtgagct cgcacaaccg aaagggcctg accccttact tagctccctc
3061 cttgaaacaa agagcagact gtggagagct gggagagcgc agccagctcg ctctttgctg
3121 agagcccctt ttgacagaaa gcccagcacg accctgctgg aagaactgac agtgccctcg
3181 ccctcggccc cggggcctgt ggggttggat gccgcggttc tatacatata tacatatatc
3241 cacatctata tagagagata gatatctatt tttcccctgt ggattagccc cgtgatggct
3301 ccctgttggc tacgcaggga tgggcagttg cacgaaggca tgaatgtatt gtaaataagt
3361 aactttgact tctgacaaaa aacaaaaagt gctgcatggc tcgcatggaa tccacgcgct
3421 ccagggactc tgcccgcccc cgcgactgga gacggcatct cgttcacagc acccaccctc
3481 ttacctgata agttccatcg tatcaaactt tctataaaca aaatacagta taatcagaaa
3541 gtgccatttc gccattattt gtgatcggta ggcagttcag agcataagtt aactgtgaaa
3601 aaaatgtaaa ggttttattt aggacatttg catggctagt catcagtcca ttttatgagt
3661 taacaatgta ttttgttgag ggaagttttt aggggttgtt ttgggttctt ttattttgat
3721 ggtgatgttt tattttattt tatttttttc agggggtctt ttttttaata catatccaat
3781 aatgccttcc atctgaatgt aaaataagta cccatgattt ctattatagt atcagtgtaa
3841 ttatttaaaa aatgattttg aggcagttaa gcatgaccaa ttaatgtcac tctagtgctt
3901 aggctgcgat cctatggtag caattctgtg ctggtataaa tcttacttat aaagtaggaa
3961 aagagaaccg aggaagcacg tgaaacttac taattctatt cgaggatttt ataatggcat
4021 attttttcag tattaaagcg aaaatgtttt caactctggg tccttacctt tttccagctt
4081 catatttgca agtggtaaat tggatttgcg gtggaagaga caggggaggg aaacggttgg
4141 ggttagatcc cttcctgagc tacattaagg ctctttctct aatcgcctta cttagctttt
4201 taccctttaa gtagctcctc ttccctcgcc cccaccctct accccacccc caccttcgct
4261 cagactttac cggctttccc cagtccataa aggtcttgcc ccaacactca ccccttcttt
4321 ttttcccctc tccaaatgca gcagtgaatc cctttattaa tactggaaat ccctctctgc
4381 tgcttttgtt ggtgctgccc acactgcaga tatattaagg atgttaggag agatttgatt
4441 taattgactc tgcctagata ggtctcatta aacagagtgg agatttcatt ggtcagcact
4501 cctcaatgaa agacagacct aatgactggc atttgagatg ctgctggcat tttgaattca
4561 acatctgctg aaaacggtaa aactaattag tgcccaccca ccctccccgc cccagcaact
4621 gcatattgaa atttgttaaa gcactcatct ttatggaaat taatcattat cctaaagaag
4681 tgtttctctc ccatcatccg gatttctggt tgtggcccag caattaacaa aaacagcttc
4741 aactgttcga attttatgaa ccaatgtaac tctggcctca atcatattcc tctgggattt
4801 ctaaacagca gttaagctac aaaaagcaaa caaaaccaca catattgatg gagtctgcat
4861 tccaccacat atccaccctt gagaagtatg tcaaaagact gcagactata gatttttttt
4921 taatatagga ttataaatca gctagtgaaa gacgtcagag cagttgtaag tagatctgcc
4981 atctagaact catattctaa agggaagtga tttctcagaa cagtgatgtt ctggaatatg
5041 tattatttat tttaacactt ttttaataaa atctttatta taaaccaaaa aaaaaaaaaa
5101 aa
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