LOCUS BC050330 4517 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens Alstrom syndrome 1, mRNA (cDNA clone IMAGE:4827788),
partial cds.
ACCESSION BC050330
VERSION BC050330.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4517)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4517)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: i Column: 4.
FEATURES Location/Qualifiers
source 1..4517
/db_xref="H-InvDB:HIT000259102"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4827788"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..4517
/gene="ALMS1"
/gene_synonym="ALSS"
/gene_synonym="KIAA0328"
/db_xref="GeneID:7840"
/db_xref="MIM:606844"
CDS <1..4382
/gene="ALMS1"
/gene_synonym="ALSS"
/gene_synonym="KIAA0328"
/codon_start=3
/product="ALMS1 protein"
/protein_id="AAH50330.1"
/db_xref="GeneID:7840"
/db_xref="MIM:606844"
/translation="NKIIIPMMTVIKSDSSSDASDGNGSCSWDSNLPESLESVSDVLL
NFFPYVSPKTSITDSREEEGVSESEDGGGSSVDSLAAHVKNLLQCESSLNHAKEILRN
AEEEESRVRAHAWNMKFNLAHDCGYSISELNEDDRRKVEEIKAELFGHGRTTDLSKGL
QSPRGMGCKPEAVCNHIIIESHEKGCFRTLTSEHPQLDRHPCAFRSAGPSEMTRGRQN
PSSCRAKHVNLSASLDQNNSHFKVWNSLQLKSHSPFQNFIPDEFKISKGLRMPFHEKM
DPWLSELVEPAFVPPKEVDFHSSSQMPSPEPMKKFTTSITFSSHRHSKCISNSSVVKV
GVTEGSQCTGASVGVFNSHFTEEQNPPRDLKQKTSSPSSFKMHSNSQDKEVTILAEGR
RQSQKLPVDFERSFQEEKPLERSDFTGSHSEPSTRANCSNFKEIQISDNHTLISMGRP
SSTLGVNRSSSRLGVKEKNVTITPDLPSCIFLEQRELFEQSKAPRADDHVRKHHSPSP
QHQDYVAPDLPSCIFLEQRELFEQCKAPYVDHQMRENHSPLPQGQDSIASDLPSPISL
EQCQSKAPGVDDQMNKHHFPLPQGQDCVVEKNNQHKPKSHISNINVEAKFNTVVSQSA
PNHCTLAASASTPPSNRKALSCVHITLCPKTSSKLDSGTLDERFHSLDAASKARMNSE
FNFDLHTVSSRSLEPTSKLLTSKPVAQDQESLGFLGPKSSLDFQVVQPSLPDSNTITQ
DLKTIPSQNSQIVTSRQIQVNISDFEGHSNPEGTPVFADRLPEKMKTPLSAFSEKLSS
DAVTQITTESPEKTLFSSEIFINAEDRGHEIIEPGNQKLRKAPVKFASSSSVQQVTFS
RGTDGQPLLLPYKPSGSTKMYYVPQLRQIPPSPDSKSDTTVESSHSGSNDAIAPDFPA
QVLGTRDDDLSATVNIKHKEGIYSKRVVTKASLPVGEKPLQNENADASVQVLITGDEN
LSDKKQQEIHSTRAVTEAAQAKEKESLQKDTADSSAAAAAEHSALVGDPEMKNLPDTK
AITQKEEIHRKKTVPEEAWPNNKESLQINIEESECHSEFENTTRSVFRSAKFYIHHPV
HLPSDQDICHESLGKSVFMRHSWKDFFQHHPDKHREHMCLPLPYQNMDKTKTDYTRIK
SLSINVNLGNKEVMDTTKSQVRDYPKHNGQISDPQRDQKVTPEQTTQHTVSLNELWNK
YRERQRQQRQPELGDRKELSLVDRLDRLAKILQNPITHSLQVSESTHDDSRGERSVKE
WSGRQQQRNKLQKKKRFKSLEKSHKNTGELKKSKVLSHHRAGRSNQIKIEQIKFDKYI
LSKQPGFNYISNTSSDCRPSEESELLTDTTTNILSGTTSTVESDILTQTDREVALHER
SSSVSTIDTARLIQAFGHERVCLSPRRIKLYSSITNQQRRYLEKRSKHSKKVLNTGHP
LVTSEHTRRRHIQVHGYRFHLAM"
BASE COUNT 1494 a 980 c 899 g 1144 t
ORIGIN
1 ggaataaaat tattatccct atgatgactg tcataaaaag tgattcaagt agtgatgcca
61 gtgatggaaa tggttcctgc tcgtgggaca gtaatttacc agagtctttg gaatcagttt
121 ctgatgttct tctaaacttc tttccatatg tttcacccaa gacaagtata acagatagca
181 gggaggaaga gggtgtgtca gagagtgagg atggtggtgg tagcagtgta gattcactgg
241 ctgcacatgt gaaaaacctt ctgcaatgtg aatcctcact gaatcatgct aaagaaatac
301 tcagaaatgc agaggaagag gaaagccggg tacgagcaca tgcctggaat atgaagttca
361 atttagcaca tgattgtgga tactccattt cagaattaaa tgaagatgac aggaggaaag
421 tagaagagat caaggcagag ttatttggtc atggaagaac aactgacttg tccaagggtt
481 tacagagtcc acggggaatg ggatgcaagc cagaagctgt atgtaatcac attattattg
541 agagccatga aaagggatgt ttccggactc taacttctga acatccacaa ctagatagac
601 acccttgtgc tttcagatct gctggaccct cagaaatgac cagaggacgg cagaacccat
661 catcatgcag agccaagcat gtcaaccttt ctgcatcctt agaccagaac aactcccatt
721 tcaaagtttg gaattccttg cagttaaaaa gtcattcccc atttcagaac tttatacctg
781 atgaattcaa aattagcaaa ggtcttcgaa tgccattcca tgaaaagatg gacccttggc
841 tgtcagaatt agtagaacct gcttttgtgc cacctaaaga agtggatttt cattcttcat
901 cacaaatgcc gtccccagaa cccatgaaaa agtttactac ctccatcact ttttcatctc
961 accgacattc taaatgcatt tccaattcct ctgttgttaa ggttggtgtt actgaaggta
1021 gccagtgtac tggagcatct gtgggggtat ttaattctca tttcactgaa gaacaaaatc
1081 ctcccagaga tcttaaacag aaaacctctt ccccttcatc atttaaaatg catagtaatt
1141 cacaagataa agaagtgact attttagcag aaggtagaag gcaaagccaa aaattacctg
1201 ttgattttga gcgttctttt caagaagaaa aacccttaga aagatcagat tttacaggca
1261 gtcattctga gcccagtacc agggcaaatt gtagcaattt caaggaaatt cagatttctg
1321 ataaccatac ccttattagc atgggcagac caagttccac cctaggagta aacagatcga
1381 gttccagact aggagtaaaa gagaagaatg taactataac tccagatctt ccttcttgca
1441 tttttcttga acaacgagag ctctttgaac aaagcaaagc cccacgtgca gatgaccatg
1501 tgaggaaaca ccattctccc tctcctcaac atcaggatta tgtagctcca gaccttcctt
1561 cttgcatttt tcttgaacaa cgagaactct ttgaacagtg caaagcccca tatgtagatc
1621 atcaaatgag agaaaaccat tctccccttc ctcaaggtca ggattctata gcttcagacc
1681 ttccgtctcc catttctctt gaacaatgcc aaagcaaagc gccaggtgta gatgaccaaa
1741 tgaataaaca ccattttccc cttcctcaag gtcaggattg tgtagtggaa aagaataatc
1801 aacataagcc taaatcacac atttctaata taaatgttga agccaagttc aatactgtgg
1861 tctcccagtc agccccaaat cactgtacat tagcagcatc tgcatctact cctccttcaa
1921 atagaaaagc actttcttgt gttcatataa ctctttgtcc caagacttct tccaagttgg
1981 atagtggaac tttagatgaa agattccatt cattggatgc tgcttctaaa gcgaggatga
2041 atagtgagtt taactttgac ttacatactg tatcttcgag atcactggaa ccaacctcca
2101 aattattgac cagtaaacct gtagcacagg atcaagaatc tttaggtttt ctaggaccta
2161 aatcttcact ggatttccaa gtcgtacagc cttctcttcc agacagtaac actattactc
2221 aggacttgaa aaccatacct tctcagaata gccagatagt aacctccagg caaatacaag
2281 tgaacatttc agatttcgaa ggacattcca atccagaggg gaccccagta tttgcagatc
2341 gattaccaga gaagatgaag accccacttt ctgctttctc tgaaaaattg tcatctgatg
2401 cagtcactca gataacaaca gaaagtccag aaaagaccct attttcatct gagattttta
2461 ttaatgctga agatcgtgga catgaaatta tagagcctgg taaccagaag ctacgcaaag
2521 ctcctgtcaa gtttgcctca tcatcttcag tccaacaggt tactttttct cgcggcacag
2581 atggccagcc tttattattg ccatataagc cttctggtag taccaagatg tattatgttc
2641 cacaattaag acaaattcct ccatctccgg attccaaatc agataccacc gttgaaagct
2701 cccattcagg atccaatgat gccattgctc cagacttccc agctcaggtg ctaggcacaa
2761 gagatgatga cctctcagcc actgttaaca ttaaacataa agaaggaatc tacagtaaga
2821 gggtagtgac taaggcatcc ttgccagtgg gagaaaaacc cttgcagaat gaaaatgcag
2881 atgcctcagt tcaagtgcta atcactgggg atgagaacct ctcagacaaa aaacagcaag
2941 agattcacag tacaagggca gtgactgagg ctgcccaggc taaagaaaaa gaatctttgc
3001 agaaagatac tgcagattcc agtgctgctg ctgctgcaga gcactcagct ctagtaggag
3061 acccagaaat gaagaacttg ccagacacta aagccattac acagaaagag gagatccata
3121 ggaagaagac agttcccgag gaagcctggc caaacaataa agaatcccta cagatcaata
3181 ttgaagagtc cgaatgtcat tcagaatttg aaaatactac ccgttctgtc ttcaggtcag
3241 caaagtttta cattcatcat cccgtacacc taccaagtga tcaagatatt tgccatgaat
3301 ctttgggaaa gagtgttttc atgagacatt cttggaaaga tttctttcag catcatccag
3361 acaaacatag agaacacatg tgtcttcctc ttccttatca aaacatggac aagactaaga
3421 cagattatac cagaataaag agcctcagca tcaatgtgaa tttgggaaac aaagaagtga
3481 tggatactac taaaagtcaa gttagagatt atccaaaaca taatggacaa attagtgatc
3541 cacaaaggga tcagaaggtc accccagagc aaacaactca gcacactgtg agtttgaatg
3601 aactgtggaa caagtatcgg gagcgacaga ggcaacagag acagcctgag ttgggtgaca
3661 ggaaagaact gtccttggtg gaccgacttg atcgtttggc taaaattctt cagaatccaa
3721 tcacacattc tctccaggtc tcagaaagta cacatgatga tagcagaggg gaacgaagtg
3781 tgaaggaatg gagtggtaga caacagcaga gaaataagct tcagaaaaag aagcggttta
3841 aaagcctaga gaaaagccat aaaaatacag gcgagcttaa aaaaagcaag gtgctttctc
3901 atcatcgagc tgggaggtct aatcaaatta aaattgaaca gattaaattt gataaatata
3961 ttctgagtaa acagccaggt tttaattata taagcaacac ttcttcggat tgtcggccct
4021 cagaggagag tgagctgctc acagatacta ccaccaacat cctttccggc accacttcta
4081 ctgtcgaatc agatatattg acccaaacag atagagaggt ggctctgcac gaaaggagta
4141 gctctgtttc cactattgac actgcccggc tgattcaagc ttttggccat gaaagagtat
4201 gcttgtcacc cagacgaatt aaattatata gcagcatcac caaccaacag aggagatacc
4261 ttgagaagcg gagcaaacac agcaagaaag tgctgaatac aggtcatccc ctagtgactt
4321 ctgagcacac cagaaggaga cacatccagg tacatggcta cagattccat ctggcaatgt
4381 gactgccctc ttcatggact ttttagttaa gctttgcaca caggtgaaaa aaacaagcca
4441 tttgcccttt cctctctata ccatttctta ccaactggaa aagagtgaga aagtgtagta
4501 caaaaaaaaa aaaaaaa
//