LOCUS BC047109 4412 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens radixin, mRNA (cDNA clone MGC:48283 IMAGE:5284438), complete cds. ACCESSION BC047109 VERSION BC047109.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4412) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4412) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-FEB-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: g Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 62244047. FEATURES Location/Qualifiers source 1..4412 /db_xref="H-InvDB:HIT000053090" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48283 IMAGE:5284438" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4412 /gene="RDX" /db_xref="GeneID:5962" /db_xref="HGNC:HGNC:9944" /db_xref="MIM:179410" CDS 211..1962 /gene="RDX" /codon_start=1 /product="radixin" /protein_id="AAH47109.1" /db_xref="GeneID:5962" /db_xref="HGNC:HGNC:9944" /db_xref="MIM:179410" /translation="MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWF FGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLF FLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQ HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWL GVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRI NKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKEKREIAE KEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKE RRAAEEAKSAIAKQAADQMKNQEQLAAELAEFTAKIALLEEAKKKKEEEATEWQHKAF AAQEDLEKTKEELKTVMSAPPPPPPPPVIPPTENEHDEHDENNAEASAELSNEGVMNH RSEEERVTETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRDKYKTLR QIRQGNTKQRIDEFEAM" BASE COUNT 1471 a 744 c 897 g 1300 t ORIGIN 1 attgcggagc tgtctgcggt ggcggcggcg cctctcgtct cccgcggccc agcgctcgca 61 ccaccgcttc tccctccctg tcgcagccgc gccgccgcgc agcgccccag ccacacgccg 121 gcgggcagaa gccgcccgct ctccggaaag tgataacaga attcattgaa gtggagaatt 181 tttaaagaag gtaacaaaaa gagaaagaaa atgccgaaac caatcaacgt aagagtaact 241 acaatggatg ctgagctgga atttgccatt cagcccaata caactggcaa acaacttttt 301 gaccaggtgg tgaaaacagt tggtttgcgt gaggtctggt tttttgggct gcagtatgta 361 gacagcaaag gttattctac atggcttaaa ctaaataaaa aggtaacaca gcaggatgtt 421 aaaaaagaga atcctttaca gttcaagttt agagctaaat tctttcctga agatgtttct 481 gaggaattaa ttcaagaaat aacccagaga ctcttcttct tgcaagttaa agaagccatc 541 ttaaatgatg agatatattg cccgccagaa actgcagttc ttttggcttc ctatgctgtc 601 caagccaagt atggagatta caataaagag attcataagc caggctacct ggctaatgat 661 agactcctac cccagcgtgt attggaacaa cacaaactaa caaaagaaca gtgggaagaa 721 agaatacaga actggcatga agaacataga ggaatgttaa gggaggattc tatgatggaa 781 tacctgaaga ttgcacaaga tctagaaatg tatggagtca actattttga aataaaaaat 841 aaaaaaggaa ctgaattgtg gctaggtgtt gatgctttgg gtctgaatat ttatgagcat 901 gacgacaagt taacacctaa aattggtttt ccctggagtg aaatcagaaa tatttcattt 961 aatgacaaaa aatttgttat aaagccaatc gacaaaaagg cacctgattt tgtgttttat 1021 gcacctcgtc tgagaatcaa taagaggatt ttggccttat gtatgggaaa ccatgaacta 1081 tacatgcgaa gaaggaagcc tgatactatt gaagtacaac agatgaaggc tcaggctagg 1141 gaggagaaac atcagaagca gttggaaagg gcacaattag agaatgaaaa ggagaaaaga 1201 gaaatagcag aaaaggaaaa ggaaagaata gaacgtgaaa aggaagagct aatggaacgt 1261 ctaaaacaaa ttgaagagca gacaattaaa gctcagaaag aactagaaga acagactcga 1321 aaagctctag aactggatca agaacgaaaa cgagcaaaag aagaagcaga acgacttgaa 1381 aaggagcgtc gagctgctga agaggcaaag tctgccatag caaaacaagc tgccgaccag 1441 atgaagaatc aggagcagct agcagcagaa cttgctgaat tcactgccaa gattgcactt 1501 ctagaggaag ccaagaagaa aaaggaagag gaagctactg agtggcaaca caaagctttt 1561 gcagcccagg aagacttgga aaagaccaaa gaagagttaa aaactgtgat gtctgccccc 1621 cctccacctc caccaccacc agtcattcct ccaacagaaa acgaacatga tgaacacgat 1681 gagaataatg ctgaagctag tgctgaatta tcaaatgaag gggtaatgaa ccatagaagc 1741 gaggaagaac gtgtaaccga aacacagaaa aatgagcgtg ttaagaagca acttcaggca 1801 ttaagttcag aattagccca agccagagat gaaaccaaga aaacacaaaa tgatgttctt 1861 catgctgaga atgttaaagc aggccgtgat aagtacaaga ctctgcgaca gattcgacaa 1921 ggcaatacaa agcagcgtat cgatgagttt gaagcaatgt gagagctgtt attttgcata 1981 tatgttcttc ataagctgaa ccaccaacag agaaaagcag gcctttgcag atatgatgga 2041 atgcatccca ccttgccaaa gcacttacac cagtttgact gtgctagcta aaagacaaat 2101 ttaaggggag ctcttcaaca ttaaggcagt atgatatcat gcttggtttt cttttttctt 2161 ttggtccagg gaatggagaa tggtgttcca ttgcctcttt tcacattttt tttctttttc 2221 tttttttttt ctgttgaaga ttaacactaa ttatcacgtc tgacaaatgt gtatgtgtgg 2281 tttcagttct gtgtacattt taaaggataa tggtgaacat tttaatgggt ttcccttgcc 2341 ctttccatat ttaacctatt tccacattct ctctcactca cattttctca gtgtgccctt 2401 ctcttatctg ccgtgtccat agccataatt ccaccatcat acagatcagg cagtgtttaa 2461 aatgatggta ggtagcacag tggacagtct ttgatcatca tgtagaatat ggctatgaat 2521 caggaaagag attagaacat ttaataatgt atgtacagct ggtgcttagt ttttttttaa 2581 tctaaattta attaccttat tggatatttg atatttggtt atttaatcac agtcatcttt 2641 aacagcttac actgattggt gttttatctc ctgtgatcct ttgatggctt tttttgccta 2701 ccatttcaca gaggtttaga cagcagtagt agctccctag gagagtttac tgatgaaaca 2761 gcctctgcaa gattttaaaa gttttgttct tttatagact gatttagaaa aacaaatgat 2821 tagttaaaaa aagaaaatat acatttgttg gtaactaatg ttatttttta aaacctggac 2881 ctttctggaa gggcagcata taaaaacatc agtcccgagg aggggacaac aatactacct 2941 cactactaca tctgtgatga ctggttgttc aaacacaatg gagtgtgtaa ggtatatgtt 3001 ttataattca taaccatagc ctcgatcatc aagaaatact ttcgaaattt cattttcctt 3061 cagaatatct taagagtgct aaatttttaa ctgccttttt gtcgagtcaa actgtgggat 3121 tctgatttgt attaaaattg taagctcctc actggtatac tatcatcctg gaggggtgtt 3181 gtatggctga gcaagagaga gagagaatga gagagagact gtgtgtgtgt gtgtgtgtgt 3241 gtgtactctg tgtgtgtatg agagagagag agaaatgcta accttgtagc atgtgaagaa 3301 tgtctgtacc ttgatacgat agttacataa tcagtatatt tggtttctag atcactgtgc 3361 ttattttgtt tcaatctctg actaaaaata cttaaatttg gtttgttaat tcttatttta 3421 gaaattataa ttttagttta tattaatttc ggttatagct tactgaagaa atctttccag 3481 ttagaaggag gttctaatat tcacatgttc taatactttg tttattgtaa aacagctaaa 3541 tttggagata cgtaaagcct tgttttctct gtgtggttca gctactttcc atttggtatt 3601 acacagtcaa atttacattt atctattaaa attgccattt tattaaacat tttcatgcac 3661 agtagattca agttgtgtct gaaaatatct cttgtgcttt tttgattttg ctgactttaa 3721 aaggattaat ctgggcagac attatgtaaa agaaaggttg cgtttaatat attttttgaa 3781 ctttgtagga caaaacatag ctggttaacc ttgaagtgac tgttgtacca tggttgtgca 3841 catgcttcag aatcctatgg aagagaatat tcctacttgc agtacatcaa aggaatggat 3901 ggtggaccct actattcatg ttttgagaca taaatgttca ctttaaagca attgcataat 3961 agataaaaac ctgaactttc attggatttt tgttaatttt cctcattttg aattatgtgc 4021 actaccatag ctacatcagt ttgatacagt attgaaaaat tatcagttat attttgctgt 4081 ttatgatcta tttgtagatt aggattaaaa tggatttaat ccatttttaa ggctgtgtga 4141 atttttctaa acaagaacca tttgcaatat ggatttctta gagattaaac caattataac 4201 ttattagcag tcgcgagcac atgttcatat agtcaatgta aaaatacact aatgagtatt 4261 tggtaaatcc cagtaggctt ttaccattag cataattttg tgttgtacaa ttaagttaca 4321 attacatctc taattttgga taatattcat tggttaacaa taaagtgaca aaagctcaaa 4381 aaaaaaaaaa aaaaagaaaa aaaaaaaaaa aa //