LOCUS BC045649 4566 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens zinc finger protein 546, mRNA (cDNA clone MGC:43537
IMAGE:5268795), complete cds.
ACCESSION BC045649
VERSION BC045649.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4566)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4566)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: g Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341741.
FEATURES Location/Qualifiers
source 1..4566
/db_xref="H-InvDB:HIT000052958"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43537 IMAGE:5268795"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4566
/gene="ZNF546"
/gene_synonym="MGC43537"
/db_xref="GeneID:339327"
/db_xref="HGNC:HGNC:28671"
CDS 171..2681
/gene="ZNF546"
/gene_synonym="MGC43537"
/codon_start=1
/product="zinc finger protein 546"
/protein_id="AAH45649.1"
/db_xref="GeneID:339327"
/db_xref="HGNC:HGNC:28671"
/translation="MQVDPPLHGPPNDFLIFQIIPLHSLSIMPRFLWILCFSMEETQG
ELTSSCGSKTMANVSLAFRDVSIDLSQEEWECLDAVQRDLYKDVMLENYSNLVSLGYT
IPKPDVITLLEQEKEPWIVMREGTRNWFTDLEYKYITKNLLSEKNVCKIYLSQLQTGE
KSKNTIHEDTIFRNGLQCKHEFERQERHQMGCVSQMLIQKRISHPLHPKIHAREKSYE
CKECRKAFRQQSYLIQHLRIHTGERPYKCMECGKAFCRVGDLRVHHTIHAGERPYECK
ECGKAFRLHYHLTEHQRIHSGVKPYECKECGKAFSRVRDLRVHQTIHAGERPYECKEC
GKAFRLHYQLTEHQRIHTGERPYECKVCGKTFRVQRHISQHQKIHTGVKPYKCNECGK
AFSHGSYLVQHQKIHTGEKPYECKECGKSFSFHAELARHRRIHTGEKPYECRECGKAF
RLQTELTRHHRTHTGEKPYECKECGKAFICGYQLTLHLRTHTGEIPYECKECGKTFSS
RYHLTQHYRIHTGEKPYICNECGKAFRLQGELTRHHRIHTCEKPYECKECGKAFIHSN
QFISHQRIHTSESTYICKECGKIFSRRYNLTQHFKIHTGEKPYICNECGKAFRFQTEL
TQHHRIHTGEKPYKCTECGKAFIRSTHLTQHHRIHTGEKPYECTECGKTFSRHYHLTQ
HHRGHTGEKPYICNECGNAFICSYRLTLHQRIHTGELPYECKECGKTFSRRYHLTQHF
RLHTGEKPYSCKECGNAFRLQAELTRHHIVHTGEKPYKCKECGKAFSVNSELTRHHRI
HTGEKPYQCKECGKAFIRSDQLTLHQRNHISEEVLCIM"
BASE COUNT 1525 a 852 c 921 g 1268 t
ORIGIN
1 gttattattc acttgcgggc gagaagtccg agctagggat cctgaaaagg agggaacaat
61 tgttgtagca ggtctaaaag ttcaggtcca ggaaatggaa acattgcttt gcttttcctg
121 aattgtccag tgacctatcc caggccttcc tttccagtga acaatggacc atgcaggtgg
181 accctcctct tcacgggcct ccaaatgact ttctcatttt tcaaatcatt cctctgcact
241 cactttctat aatgccccgg tttctctgga ttctgtgctt ctccatggag gaaactcaag
301 gagaactgac aagttcttgt ggttctaaaa ccatggccaa tgtatctttg gcatttaggg
361 atgtgtccat agacctctcc caagaggagt gggagtgcct ggacgctgtg cagagggact
421 tgtacaagga tgtgatgttg gagaactaca gcaacctggt ctcactggga tataccattc
481 ctaagccaga tgtgattact ttattggagc aagagaaaga gccctggata gtaatgaggg
541 aagggacaag gaattggttc acagatttgg aatacaagta tattaccaag aatttgcttt
601 cagaaaagaa tgtttgcaaa atctatttat ctcaattgca gacaggggaa aaaagtaaaa
661 acaccatcca tgaggacacc attttcagaa atggtttgca gtgtaaacat gaatttgaga
721 gacaagagag acatcagatg ggatgcgtta gtcaaatgct aatccaaaaa cgaatatctc
781 atcctctaca tccaaaaatt catgctagag agaaatcata tgaatgtaag gaatgtagaa
841 aggcctttag acaacagtca taccttattc aacatctgag aattcacact ggtgagagac
901 cctataaatg tatggaatgt ggaaaggcct tttgtcgagt gggagacctt agagtacatc
961 acacaatcca tgctggggag agaccctatg aatgtaaaga atgtgggaag gcctttagac
1021 ttcattatca ccttactgaa catcagagaa tacattctgg tgtgaaaccc tacgagtgta
1081 aggaatgtgg gaaagccttt agtcgtgtta gagaccttag agtacatcag acaattcatg
1141 ctggagagag accttatgaa tgtaaagaat gtgggaaggc ctttagactt cattatcaac
1201 taactgaaca tcaaagaatt catactggtg agaggcctta tgaatgtaag gtttgtggca
1261 agacctttag ggtacaacga catattagtc aacatcagaa aattcatact ggtgtcaaac
1321 cctataaatg taatgaatgt gggaaggcct ttagtcatgg ctcatacctt gttcaacatc
1381 agaaaattca tactggtgaa aaaccctacg aatgtaaaga atgtggtaag tcctttagtt
1441 ttcatgcaga acttgctcga caccgtagaa ttcatactgg tgagaaaccc tatgaatgta
1501 gagaatgtgg aaaagccttt cgtcttcaaa cggaacttac tcggcatcat agaactcata
1561 ctggtgagaa accctatgaa tgtaaggaat gtgggaaggc ctttatttgt ggttatcaac
1621 ttactttaca tctgagaact cacaccggtg agattcccta tgaatgtaag gaatgtggaa
1681 aaaccttcag tagtcgctat catctcactc aacactacag aattcatact ggtgagaaac
1741 cctacatatg taacgaatgt ggaaaagcct ttcgtcttca aggagaactt acccgacatc
1801 acagaattca tacatgtgag aaaccctatg aatgtaagga atgtgggaag gcttttattc
1861 atagcaatca atttatttca caccagcgaa ttcacaccag tgagagcacc tacatatgta
1921 aagaatgtgg gaagattttt agtcgtcgct ataatcttac tcaacatttt aaaattcata
1981 ctggtgaaaa accctacata tgtaatgaat gtgggaaagc ctttcgattt caaacagaac
2041 ttactcagca tcacagaatt catactggtg aaaaacccta taaatgtacg gaatgtggga
2101 aggcctttat tcgtagcact catctcacgc aacatcacag aattcatact ggtgagaaac
2161 cctacgaatg tacggaatgt gggaagacgt ttagtcggca ctatcatctt actcaacatc
2221 acagaggcca tactggtgag aagccctaca tatgtaatga atgtgggaat gcttttattt
2281 gcagttatcg acttacatta catcaaagaa ttcacactgg tgagcttcca tatgaatgta
2341 aggaatgtgg aaagaccttt agtcgtcggt atcatcttac tcaacatttt agacttcata
2401 ctggtgagaa accttatagc tgtaaagaat gtgggaatgc ctttcgtctt caagcagaac
2461 ttactcgaca tcacatagtt cacacgggtg agaaacccta taaatgtaaa gaatgtggga
2521 aagccttcag tgttaattca gaacttactc gacatcacag aattcatact ggtgaaaaac
2581 cctatcaatg taaagaatgt ggaaaagcct ttattcgtag tgatcaactt actttacatc
2641 agagaaatca tattagtgag gaagtcctat gcataatgta aagagaatac gatggccttt
2701 agaaaatgcc ctttagcaga gaatttgtaa tttaagaaat tttctgtttg ttacggaaca
2761 tgtgggaatc ccttttactt catgctcaca atttatcaga aattatttcg tatgttaaag
2821 agtcgaaaga ctatagcatc actcagtccc tgttagactt tagaagattg atactgatgc
2881 actgcatccc aaaccatcag ggccttttcc cctacaaact gttgttgaac agtgcttctc
2941 taaaatgcaa taataatggg ccaggtgaag tggctcacac ctgtaatccc agcactgtgg
3001 aaagacagga gttcgaaacc agcctgggca acatagtgag accctgcctc atggctttag
3061 tgagccatga ttgtgccact gcactccagc ttggtgacag agtgagatcc tgtctctaaa
3121 taaataaata aaatgcgggc caggcacagt ggctcacacc tgtaatccca gcactatggg
3181 aggcccaggt gagcagatca cctgaggtca ggagttcaag accagcctgg ccaacatggt
3241 gaaacccctt ctctactaaa atacacaaat tagctaggca ttgtgggggg tgcctgtaat
3301 cccagctact caggaggctg aggcaggaaa attgcatgaa cctaagtggc agaggttgca
3361 gtgagctgag atcgcaccac tgcactctag cttgggcaac agagcaagac tctgtctctt
3421 aaataaataa ataaatagat taccagaaaa atgaaaagaa aaaaacagac atacaaaata
3481 aaagccccag ttttttatta tggtatttaa ctgagttaac tctgtcagat tgctgcaaac
3541 atttctaaat acttgctctt ggtatctata acttttgcag agaccagaag caaacaattt
3601 gtgggccagt gtcaacacat ggaccacact ttatatagca ctgtaacgga aaatgattct
3661 gttaatgtaa tgaacatggg aaagaccagc cttggcctat ctttatgata tatataaata
3721 atataattct cataattcca cctctgccta tgtggtgttt ggcaaaacat gcccctgtgc
3781 cttggttttt aaaatggtaa taacagtacc acctaatagt atttttgtga ggatgaaatg
3841 ctaataaaag ataaaacctt taaaagagta tttggcacac agcattttat caataaatat
3901 tgctttattt ttttcattgg ggatacattt agtacattca tgtgagagga aggccctgtg
3961 ggtgtaagaa atttgtaaaa actgtccatt acctttcact ccttatttag attggaataa
4021 ttaactggag ataatatcca gtaaaataga ttaaacttcc atttataaag tcagaaccta
4081 tctctgaaaa ttaatgtgag aaagaaatct ctagatttga tgggtgtgaa gattatgaga
4141 gtaaagtttt gaagactcag ggatagctgt aatgcttttt tctttttata acccaaaaag
4201 caggtatgtc agtcgctttt tctgcccaca atgataaatt aaaaacagcc actatccatt
4261 tggaaaactt aaaagaataa tgaacagtta tgttctatct agattcagca attgttaata
4321 tgttgtcaca tttggtttgc ttatacataa tatttacata ttttgctgta gtatttgagt
4381 ataaattgca gatactataa cacatcacat ctaagaataa aggctgcctc ctacttaatt
4441 gctatataac aattgtccaa cctgtctgtg ccccagggca gctttgaatg cagtccaaca
4501 gaaattaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaag aaaaaaaaaa
4561 aaaaaa
//