LOCUS BC042900 3589 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens lipase, family member J, mRNA (cDNA clone
IMAGE:4823575), with apparent retained intron.
ACCESSION BC042900
VERSION BC042900.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3589)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3589)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: i Column: 14
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3589
/db_xref="H-InvDB:HIT000097405"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4823575"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1120 a 628 c 676 g 1165 t
ORIGIN
1 agaattctca gagactatga gggttcacta tctgtttgct ggaagatata caagactttt
61 gaggataata cttaaatgaa gatagaccgg atggtaattc agttggataa tgatcagtga
121 cgttgaactt cttttcatgt gttcattggc cgtgtaaatg tcttcttttg agacctaaca
181 atacttttaa gactgttgct tctatatttg aactccttta agtcattata gactgcatag
241 tcactacttg ttgctgttat tacaataact gccagacaga aaaataaatc tacttcagac
301 ttttaaggaa gtttcatatc ttaatacttt taattgcttt ttaatggaca ctagcgggaa
361 actatcacta acaacctctg tagtggtttt ctcatttcgt caagatgtga atgtatttgg
421 attaacgtat gggaaagggg cttgaaaaaa ataggaagct gaatttaata ttgccttgag
481 ctaaatgttc tctttttatt ttttcttttt agtataatat gctttttctt agctttccta
541 tgactctact tagcaacttt tgctaaaaga aacacaatat atgactgact actttgaaga
601 cacatatatt ggacacttaa aatcaacaaa agcagagaga gccagattat ttcctactgg
661 ggctaccctg atgaagaata tgatattgta accgaagatg gttatatcct tggcctttat
721 agaattcctt attggaggac agacaataat aaaaatctag gtaatattca attgaagatg
781 gattggtgac aatctggggc ctgaagttct taattgctcc aattgacgga gaacatagga
841 caagaaaagc atcttaagat taagtgaata gttaacttcc catgtatctt ctcgcatgct
901 acaagaagag tcacacaaga agatacaccg gccttctggt cacagagagg ttgtgatgga
961 acacaagctg ttcttcccag gtttcctttg tggatcactt tgctcttaca tgttgattct
1021 ctagaatttt ctttttctga tgagaaatta gaaatgctct gaaacacaat aacattatta
1081 tgctctaggt tttgaagaaa ggctggtaca aatttccttt tttgtctttc tgattctctc
1141 ctctagaaat agcagagaga tgaggttagt agcagcctca gggctcttta ttccaacagt
1201 aagtatcatc agagtgtggt gcaaaatgca ctggaatttg ttaggagatc tgggttgtaa
1261 tcctagatct gccacttact agtagaatat gtaatggatt actttttctt attcatataa
1321 ttacccaaat aaaagccaag tattttctcc ttagcttttc ttcctgaaag aatgtttctt
1381 tcagaaggaa acaggatgtg aaacaaatag aatgtttctt atattatagg gcatcctctc
1441 aagttatttt gaacattaaa gtacacttca gagaggatat taatttgaaa caacctcaat
1501 taacataatt ttgcatattt ataaaggtta tacccagtag cagaaaatct taacatagat
1561 tttatataat aatagtaatt atcccccaag ctatgacctc attttacaag tactgtatta
1621 aagatttaaa gataatttta aaacacagca agtgccttag agtgctctaa aggcagagcc
1681 tgagagaggg gttcaggtac atgtgactga ttgatgaaat actgtcagga ggcagtaacg
1741 tggaaattag gataaagtag ggtaaagagt taaggaataa tataatatga ctcagcttgg
1801 ggctagctaa aagatgatct cagaggagtt caaggttccc ataaaaatta cactacagag
1861 gtggtcccac cctgagatta gagagccagc tttttgcatt cctaaatcag ttaatcattg
1921 cctgaaggct acccctagaa ggaggtgtga tctcttaggt gaggcagttc caatttggcc
1981 atgggcaatt ctacagagaa aggagcaata gtaaaccctt aaaaagcaac actagggcca
2041 taactagtat tcataaatgt cctcctccac tatccattct agatttcttt acctctcagc
2101 tagcctgcct gatgagcaat agtaaaccct taaaaagcaa cctaaggcca taactagtac
2161 tcataaatgt cctcctccac catctattct agctttctct acctctcagc tagcctgcct
2221 gatagggtaa gccagacctt catccctagg ggctaacata ttcgtatcag gtgatggttg
2281 cacttgttca tgtacagtta aaacagggca tagaagtagg aaaagatgac tcagtggatc
2341 tcctgaagag caaatgtatt tctccctttc ctcgttttgt agcagcagac ctacttcctt
2401 atgatgatca gggtcaatga acttcctggt cttcagtaat gaagagccca aagtgaccag
2461 gcggtggtca tagccttgtt tgttaggatg cttacagtgc cttggtggaa gcattttctc
2521 tctggagacc agggcctcta gatatgtaga ggctaaaatt gtgagaacag atccctaaat
2581 gggttactag gagtcatggc aagctcttgt tcctcagact cctgtattct acttattggg
2641 gaatcactaa tatattctca ccatttttaa aagatgtaca ataaatcctg aaggatagtg
2701 cccatactta caggatgtca tctcccagct ggctttttcc cagctggctt ttactgagca
2761 ttcaagggct tgtttcattt ttctatcagg ttggcagcct cttgttggga gttatatggt
2821 aggaccagtg gataccatgg ccatgtgcca atggatgtgt caactttgct atgtaattga
2881 tccctgattt aaaatgtgtt acttaaaatg tgtatgagtg cttgaattac tataaaattt
2941 tttattattt tctctcagta aaatgtacat atttaagtgt gatgtgacct aattgctcac
3001 ttggttattt gaaagacatc cattagtgaa ctgtattaaa cagctctgtc atacaacggg
3061 attaaatctt aataacttac cccacttatg aaaacaattt tttaaaatct ttaaactgtc
3121 atgtactaaa agtttgaatt tcagataaaa gattttcata tagataacta caaaatttat
3181 aaagaacttt ctacattttt ttctcagctc agagggttgt tgtatacttg caacatggtt
3241 tgcttacatc tgccagcagc tggatttcca atcttcccaa caatagtctg ggcttcattc
3301 tggcagatgc tggttatgat gtgtggatgg gaaatagcag aggaaatacc tggtccagga
3361 aacacttgta cctagaaacg agttccaaag aattctgggc tttcaggtac aaataaaatg
3421 aagtaacatt tcattttata agtgtataca aatttttcat tttgaatgca ataaaataaa
3481 atttaggtct tactattttc acaatttagg actttccata gactattaca atttatgtga
3541 atttttgctt gaatattaaa gagtacttgt gtgaaaaaaa aaaaaaaaa
//