LOCUS BC042476 4382 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens thyrotrophic embryonic factor, mRNA (cDNA clone
MGC:24963 IMAGE:4915095), complete cds.
ACCESSION BC042476
VERSION BC042476.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4382)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4382)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC042476.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: m Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34486096.
FEATURES Location/Qualifiers
source 1..4382
/db_xref="H-InvDB:HIT000052696"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24963 IMAGE:4915095"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4382
/gene="TEF"
/db_xref="GeneID:7008"
/db_xref="HGNC:HGNC:11722"
/db_xref="MIM:188595"
CDS 87..998
/gene="TEF"
/codon_start=1
/product="thyrotrophic embryonic factor"
/protein_id="AAH42476.1"
/db_xref="GeneID:7008"
/db_xref="HGNC:HGNC:11722"
/db_xref="MIM:188595"
/translation="MSDAGGGKKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLME
NPPREARLDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLD
EFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTES
SLEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPM
IKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALR
TEVAELRKEVGKCKTIVSKYETKYGPL"
BASE COUNT 885 a 1199 c 1270 g 1028 t
ORIGIN
1 cggcagctgc agcgggtcgc acggctccgg cccatctcgg ggggcgggcg ggggaggcga
61 ggtgcgcgag ccgagtccgg ggcacgatgt ccgacgcggg cggcggaaag aagccgcctg
121 tggacccgca ggcaggaccc ggtccggggc cggggcgcgc agctggggaa aggggcctgt
181 cggggtcctt ccccctggtc ctgaagaagc tgatggagaa ccccccgcgc gaggcgcgcc
241 tcgataagga aaaggggaag gaaaagctgg aggaggacga ggccgcagcc gccagcacca
301 tggctgtctc agcctccctc atgccaccca tctgggacaa gaccatccca tatgatggcg
361 aatctttcca cctggagtac atggacctgg atgagttcct gctggagaat ggcatccccg
421 ccagccccac ccacctggcc cacaacctgc tgctgcctgt agcagagcta gaagggaagg
481 agtctgccag ctcttccaca gcatccccac catcctcctc cactgccatc tttcagccct
541 ctgaaactgt gtccagcaca gaatcttccc tggagaagga gagggagact cccagtccca
601 tcgaccccaa ttgtgtggaa gtggatgtga acttcaatcc ggaccccgcc gacctggtgc
661 tctccagtgt gccaggcggg gagctcttca accctcggaa gcacaagttt gctgaggagg
721 acctgaagcc ccagcctatg atcaaaaagg ccaagaaggt ctttgtcccc gacgagcaga
781 aggatgaaaa gtactggaca agacgcaaga agaacaacgt ggcagctaaa cggtcacggg
841 atgcccggcg cctgaaagag aatcagatca ccatccgggc agccttcctg gagaaggaga
901 acacagccct gcggacggag gtggccgagc tacgcaagga ggtgggcaag tgcaagacca
961 tcgtgtccaa gtatgagacc aaatacgggc ccttgtaacc cgtgcccccc gcccgggcgg
1021 ggtactgcct gcacctcaga cctctgcctg ggggctccct gtaacccctc acacgcgtgg
1081 agacttatga ctcgtcgtgg gcgcatggcg gcgcacctgc tgcaggagcg gccacgtctc
1141 agcttcatta taccatggcc tgcgcacgtg gcgacgtccc tgaggggcca gtctcctcac
1201 tggtggggaa cgcaagagaa tctgcgtaga tgggtgactc agccttagtt tctattcttg
1261 gatgtcccag ttgaatcaga aggggacctc tggagtacac acctctctcc tgggcgctca
1321 gggtccctgg actctccctc agtctccagc ctgggctgcc gagggctatc tctgcagaat
1381 gagttgtgat cattgtcacc ctatgtcttc tcaggtagca gggcgcgttt ccacttaagg
1441 tgtgtctgtc acgcacctca ttctccccag acagtctttg agtaacatct gttcccatct
1501 tccttggaag caggacacac cagctcctcc gtcagtgtct gcatgggtag caggctgcag
1561 gagtggggtc tctgcacagc ctgggatggg gcttggggct ggggcctgca gcagaagtgt
1621 gcccagcgtt tctcagctcc cgcacccctt ttcccttatg gctctgaggc catcggctgt
1681 ctctgcattt cattggctgt ggaggagaga ctcctaggat ggctgctgtc tgagccatga
1741 gtgccagggc tgagagaggc ctcttcattt cctctccagg ctactcagag gccatgtgaa
1801 gctcgtttgt cccactagac caggcctctg ggcctgctct ttctttccac ccaatgtcca
1861 gtcttggatc atagatttaa aaggaaaacc cctcttatct aggaggcttt aacttcctgg
1921 accccaggat tcaccttcct agtggtgttt agaaaatgcc tccacagccc ccttccacca
1981 tgggcatgag agctggggtg tgtttcttga gaagctccct tttttcttgc tctgctcacc
2041 ggtgtggcct gggctggagt gcactctccc tgggggcagc tggggcctcg caattcttgc
2101 ttcaggatct ctcccatgcg agcggcccgg agggtgtcag cagggcaaga cacctagtct
2161 agagtcacca aggtcacagt gccactttca cgggatagca ggctcttggg acttttacac
2221 aggcctaggg tcccctcagt cttggtccca ggagatgggg gccactcgtg aggctggcca
2281 tgctgtggct tctcacagct gtggtctccc ctgcctcaca acgactcctt tctcttgtgt
2341 ggcgggactc gcccttttgc tgtgctcaga agattcactg aggaaactca tggaagcctc
2401 tgctcatttg ggtcactggg acacccctga gatgggtgtg tttatttgct cagggcgggc
2461 agcctatggt gaagaggaga cagaggcgat gggcgtgctt cgtcctccgt aacactggct
2521 ttatttaccg tggtggttca gagtcccagg ccctgacctc taaagacttt tcataacaga
2581 cgttaagacc aagccgtgga cctcacccca ggggaatgcc acggcccttt ggggacctgc
2641 acacccacct ctccggggga cttgacaagg ggccctgagg ccaagggagg tcactcctcc
2701 ctccaggccc ctgactttta ctttgtggtt ctctaaaaac catgtacaca ctttcactct
2761 attgtaacca cacagggcag gcgcatccag catgtcagtg tcctgccccg ggcagctctc
2821 cctcccgggc acgctccctc tggcctggtg gatcaccaag agggcggttc tcattttgtt
2881 attagtggaa gagccttgag cttaaaagct cttcattttc tttgccggaa agtatatggt
2941 ttgtgttttt gcagttttat ttttttaagg atggacacta aatctctggt gtccatgttc
3001 cgagcccggt ggctgggatg gtggctcgat gtgtctcctc tttatcccgc cctctgcctg
3061 tttggtgccc tcccttcttt cccccaggca gtgggtatcg ggttctttcc caaagtgctt
3121 acttggaaag agtgtggctg ctggactctt ttcgaaatgc ccctctgagt caggagcctg
3181 gtggggacaa gatggaggat gtccacagag gctgacctgt gggggaaaag aagtgctcag
3241 gtaaggttgt ctcctctcct gtcctaaaaa aatccatgct tgcaggagag ggttggtgcc
3301 tgctcagttt ctgtcgaggg aatgggagtc tcctcggctc cctcctgggc cctctgcttc
3361 ttggaggccg accgctggag actgcggctc ctgtgcttgg atctttgaca tctgtcagtc
3421 actggaggct agagaagttg actttacctt ggctttctgt gggttcccga tgggcttgga
3481 agtgccgtct acttcctaag catcctgtct aaagctttgt ggcaccctca gtgcaacctc
3541 agaacagaca aatcatgaat gagctggaac tttgcaagaa tattcatatt ataaatgtct
3601 catctgatgg aggaacgtgt gcatttagag agagggagag ttttcaaggt ttatggcaac
3661 tttgtggagg acctgggtaa ctcttaccct tggccaaagg aagaggtttt cctgtctggc
3721 ttctgaggtt ggagggggca cttagcagtg aaccttaagt ctgggtacat gtaaccctgc
3781 tgaggggctg tgcaggccgc tcctacggtc ctttggcctg aggcagggcg ggaggcatgc
3841 aagccagtgg gggaaaaccc ctctgaagct gggcagccct ctacctgggc cccgggagcc
3901 gtgctccttg gaacgcaaag ggccgaggag catctggttt tcatggcaaa gctctactcc
3961 agagctcctt taacatctgc taattaagtg caataaattt ttctagaaaa tggcaaagat
4021 gacttccagg tggatattgc tctcttacgg tgttggggat gccagaacac cacttggttt
4081 tatttttcta agtgcatgtg atgtgataga gtgtgtgggg ctctgtgtcc ttccctggga
4141 gctggcattc cagcgggccc ctctctttac ctttgttggg ggaaggaggc aagagagaaa
4201 ttccttcttc ccagccagag agggcagaag cagaccgtag cccattggcc ttatgtgcgt
4261 gtgtgcgtgc gagtgtgtca ctgctggtgg gccggagtga tgtggtggga gggaagccgg
4321 gaatgtatcc ttttcagaca aaattaaata ttttgaaatg agaaaaaaaa aaaaaaaaaa
4381 aa
//