LOCUS BC040127 1178 bp mRNA linear HUM 06-JUN-2005 DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B, mRNA (cDNA clone IMAGE:6042535), partial cds. ACCESSION BC040127 VERSION BC040127.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1178) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1178) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 84 Row: n Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8922357. FEATURES Location/Qualifiers source 1..1178 /db_xref="H-InvDB:HIT000096009" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6042535" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>1178 /gene="PRPF38B" /gene_synonym="FLJ10330" /db_xref="GeneID:55119" CDS 270..>1178 /gene="PRPF38B" /gene_synonym="FLJ10330" /codon_start=1 /product="PRPF38B protein" /protein_id="AAH40127.1" /db_xref="GeneID:55119" /translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF PRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRS RSRSHHREGHGSSSFDRDREREKKKKK" BASE COUNT 301 a 302 c 324 g 251 t ORIGIN 1 gggcagttgg cggaagagat cgagctccct ggctgccggc tcgccttctg cgtggagttc 61 tcgcggtctg ggtttcgctg tctgctcttg gcccggggtc attttgtcgg cgtcgggtgc 121 cctctcttgc ccagctgggg cacagcgagg cggccccttc tcccgacgac gttcgatgga 181 gtagggtccc agaccgttgt cccgaagagc gagatcgagc ttggccccct cccccccctc 241 cttccctccc tccttccttc cgccgcaaca tggctaacaa cagccccgcg ctgacaggca 301 actcgcagcc gcagcaccag gcggctgcag ctgcggctca gcaacagcag cagtgcggcg 361 gcggcggcgc taccaagccg gcggtctccg gcaagcaggg caatgtgctc ccgctctggg 421 gcaacgagaa gaccatgaac ctcaacccca tgatcctgac caacatcctg tcgtcgcctt 481 acttcaaagt acagctctac gagctcaaga cctaccacga ggtggtggac gagatctact 541 ttaaggtcac gcacgttgaa ccatgggaga aaggaagcag gaaaacagcg ggccagacag 601 ggatgtgcgg aggggttcga ggtgttggaa caggaggaat tgtttctaca gcattttgcc 661 tgttatacaa attatttacc ctgaagttaa ctcgaaagca agtgatgggt cttataacac 721 acacagactc tccatatatt agagcgcttg gatttatgta tataagatat acacagcccc 781 ctacagatct gtgggactgg tttgaatcct tccttgatga tgaagaggac ctagatgtga 841 aggctggtgg aggctgtgta atgaccattg gagaaatgct acgatctttt ctcacaaaac 901 tggagtggtt ttctaccttg tttccaagaa ttccagttcc agttcaaaag aatattgatc 961 aacagattaa aacccgacct agaaaaatca agaaagatgg gaaggaaggt gctgaggaaa 1021 tagacagaca tgttgaacgc agacgttcaa ggtctccaag gagatctctg agtccacgga 1081 ggtccccaag aaggtcaaga agtagaagtc atcatcggga gggccatggg tcttctagtt 1141 ttgacaggga tcgagaaaga gagaaaaaaa aaaaaaaa //