LOCUS BC039893 1874 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1), mRNA (cDNA clone MGC:47612 IMAGE:5729604), complete cds. ACCESSION BC039893 VERSION BC039893.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1874) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1874) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Invitrogen cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: i Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40316923. FEATURES Location/Qualifiers source 1..1874 /db_xref="H-InvDB:HIT000052284" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47612 IMAGE:5729604" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_124" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1874 /gene="CXCL12" /gene_synonym="chemokine" /gene_synonym="PBSF" /gene_synonym="SCYB12" /gene_synonym="SDF-1a" /gene_synonym="SDF-1b" /gene_synonym="TLSF-a" /gene_synonym="TLSF-b" /gene_synonym="TPAR1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" CDS 71..340 /gene="CXCL12" /gene_synonym="chemokine" /gene_synonym="PBSF" /gene_synonym="SCYB12" /gene_synonym="SDF-1a" /gene_synonym="SDF-1b" /gene_synonym="TLSF-a" /gene_synonym="TLSF-b" /gene_synonym="TPAR1" /codon_start=1 /product="chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)" /protein_id="AAH39893.1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANV KHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK" BASE COUNT 489 a 469 c 414 g 502 t ORIGIN 1 gccgcattgc ccgctcggcg tccggccccc gacccgcgct cgtccgcccg cccgcccgcc 61 cgcccgcgcc atgaacgcca aggtcgtggt cgtgctggtc ctcgtgctga ccgcgctctg 121 cctcagcgac gggaagcccg tcagcctgag ctacagatgc ccatgccgat tcttcgaaag 181 ccatgttgcc agagccaacg tcaagcatct caaaattctc aacactccaa actgtgccct 241 tcagattgta gcccggctga agaacaacaa cagacaagtg tgcattgacc cgaagctaaa 301 gtggattcag gagtacctgg agaaagcttt aaacaagtaa gcacaacagc caaaaaggac 361 tttccgctag acccactcga ggaaaactaa aaccttgtga gagatgaaag ggcaaagacg 421 tgggggaggg ggccttaacc atgaggacca ggtgtgtgtg tggggtgggc acattgatct 481 gggatcgggc ctgaggtttg ccagcattta gaccctgcat ttatagcata cggtatgata 541 ttgcagctta tattcatcca tgccctgtac ctgtgcacgt tggaactttt attactgggg 601 tttttctaag aaagaaattg tattatcaac agcattttca agcagttagt tccttcatga 661 tcatcacaat catcatcatt ctcattctca ttttttaaat caacgagtac ttcaagatct 721 gaatttggct tgtttggagc atctcctctg ctcccctggg gagtctgggc acagtcaggt 781 ggtggcttaa cagggagctg gaaaaagtgt cctttcttca gacactgagg ctcccgcagc 841 agcgcccctc ccaagaggaa ggcctctgtg gcactcagat accgactggg gctgggcgcc 901 gccactgcct tcacctcctc tttcaacctc agtgattggc tctgtgggct ccatgtagaa 961 gccactatta ctgggactgt gctcagagac ccctctccca gctattccta ctctctcccc 1021 gactccgaga gcatgcttaa tcttgcttct gcttctcatt tctgtagcct gatcagcgcc 1081 gcaccagccg ggaagagggt gattgctggg gctcgtgccc tgcatccctc tcctcccagg 1141 gcctgcccca cagctcgggc cctctgtgag atccgtcttt ggcctcctcc agaatggagc 1201 tggccctctc ctggggatgt gtaatggtcc ccctgcttac ccgcaaaaga caagtcttta 1261 cagaatcaaa tgcaatttta aatctgagag ctcgctttga gtgactgggt tttgtgattg 1321 cctctgaagc ctatgtatgc catggaggca ctaacaaact ctgaggtttc cgaaatcaga 1381 agcgaaaaaa tcagtgaata aaccatcatc ttgccactac cccctcctga agccacagca 1441 gggtttcagg ttccaatcag aactgttggc aaggtgacat ttccatgcat aaatgcgatc 1501 cacagaaggt cctggtggta tttgtaactt tttgcaaggc atttttttat atatattttt 1561 gtgcacattt ttttttacgt ttctttagaa aacaaatgta tttcaaaata tatttatagt 1621 cgaacaattc atatatttga agtggagcca tatgaatgtc agtagtttat acttctctat 1681 tatctcaaac tactggcaat ttgtaaagaa atatatatga tatataaatg tgattgcagc 1741 ttttcaatgt tagccacagt gtattttttc acttgtacta aaattgtatc aaatgtgaca 1801 ttatatgcac tagcaataaa atgctaattg tttcatggta aaaaaaaaaa aaaaaaaaaa 1861 aaaaaaaaaa aaaa //