LOCUS BC039735 3471 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens scavenger receptor class F, member 1, mRNA (cDNA clone
MGC:47738 IMAGE:6041360), complete cds.
ACCESSION BC039735
VERSION BC039735.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3471)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3471)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33598934.
FEATURES Location/Qualifiers
source 1..3471
/db_xref="H-InvDB:HIT000052245"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47738 IMAGE:6041360"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3471
/gene="SCARF1"
/gene_synonym="KIAA0149"
/gene_synonym="MGC47738"
/gene_synonym="SREC"
/db_xref="GeneID:8578"
/db_xref="HGNC:HGNC:16820"
/db_xref="MIM:607873"
CDS 61..2553
/gene="SCARF1"
/gene_synonym="KIAA0149"
/gene_synonym="MGC47738"
/gene_synonym="SREC"
/codon_start=1
/product="scavenger receptor class F, member 1"
/protein_id="AAH39735.1"
/db_xref="GeneID:8578"
/db_xref="HGNC:HGNC:16820"
/db_xref="MIM:607873"
/translation="MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAG
WRQKDQECTIPICEGPDACQKDEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDCRES
CPCHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCR
RPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPE
CQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSP
DTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWL
GPRCEDPCPTGTFGEDCGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGN
NCSVPCECPEGLCHPVSGSCQPGSGSRDTALIVGSLVPLLLLFLGLACCACCCWAPRS
DLKDRPARDGATVSRMKLQVWGTLTSLGSTLPCRSLSSHKLPWVTVSHHDPEVPFNHS
FIEPPSAGWATDDSFSSDPESGEADEVPAYCVPPQEGMVPVAQAGSSEASLAAGAFPP
PEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQ
SGPEGREAEESTGPDEAEAPESFPAAASPGDSATGHRRPPLGSRTVAEHVEAIEGSVQ
ESSGPVTTIYMLAGKPRGSEGPVRSVFRHFGSFQKGQAEAKVKRAIPKPPRQALNRKK
GSPGLASGSVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGCG
SPEQDPQKQAEEERQEEPEYENVVPISRPPEP"
BASE COUNT 672 a 1079 c 1057 g 663 t
ORIGIN
1 ccacgcgtcc ggagctgtgg gggccagacg aacccgagcg ctcccaccga gctgcctgcc
61 atggggctgg ggctgctgct cccgctgctg ctgctctgga ctcgggggac tcaggggtcc
121 gagctggacc ccaaagggca gcacgtctgt gtggccagca gcccctctgc tgagctgcag
181 tgctgcgcag gctggaggca gaaggatcaa gaatgcacca tccccatctg tgaggggccg
241 gacgcctgcc agaaagacga ggtgtgtgtg aagccgggcc tctgtcgatg caagcctgga
301 ttctttgggg cccactgcag ctcccgctgc ccgggccagt actggggccc cgactgccgt
361 gagagctgcc cctgccaccc gcacggccag tgcgagccag ccacgggcgc gtgccagtgc
421 caggccgacc gctggggagc ccgctgcgag ttcccgtgcg cctgcggccc ccacgggcgc
481 tgcgaccccg cgaccggcgt gtgccactgc gaacccggct ggtggtcgtc cacgtgccgc
541 cgcccgtgcc agtgcaacac cgcggcggcg cgctgcgagc aggccacggg cgcctgcgtg
601 tgcaagccgg gctggtgggg gcgccgctgc agcttccgct gcaactgcca cggctccccg
661 tgcgagcagg actccggccg ctgcgcctgc cggccgggct ggtggggtcc cgaatgccag
721 cagcagtgcg agtgtgtgcg gggccgctgc agcgccgcct ccggcgagtg cacctgcccg
781 cccggcttcc gcggagcgcg ctgcgagctg ccctgcccgg caggcagcca cggggtgcag
841 tgcgcacaca gctgtggccg ctgcaaacac aatgagccgt gctctccaga cacaggcagc
901 tgtgagtcct gcgagccggg ctggaacggg acccagtgcc agcagccctg cctgcctggc
961 acctttggcg agagctgcga acagcagtgc cctcactgcc gacatgggga ggcctgtgag
1021 ccagatactg gccactgtca gcgctgtgac cctggctggc tggggcccag gtgtgaagac
1081 ccctgcccca ctggtacctt tggggaagac tgtggctcta cctgccccac ctgtgttcag
1141 gggtcctgtg atactgtgac aggggactgt gtctgcagtg ccggctactg ggggcccagc
1201 tgcaacgcct cctgcccagc cggtttccat ggaaacaact gctcagttcc ttgtgaatgc
1261 ccagagggac tctgccaccc tgtctctggg tcctgccagc caggctctgg cagtcgggac
1321 actgccctca tcgtgggcag ccttgtgcct ctgctgctgc tcttcctggg tcttgcctgc
1381 tgtgcctgct gctgctgggc cccccgatca gacctcaagg acaggccagc gagagatgga
1441 gctaccgtgt ccaggatgaa gctgcaggtc tgggggacac tgaccagctt gggctccacg
1501 ctgccctgcc gttccctcag ctcccacaag ctaccctggg tgacagtctc acatcacgac
1561 ccggaggtcc ccttcaacca cagcttcatc gagccgccct ctgccggctg ggccactgat
1621 gactccttct catccgatcc tgagtctgga gaggcagatg aggttcctgc ctactgtgtg
1681 ccaccccaag aagggatggt ccctgtggcc caggcagggt cgtcagaggc cagcctggct
1741 gcaggtgctt tcccgccccc tgaggacgcc tccacgccat tcgccatccc gcgcacctcc
1801 agcctagctc gggccaagcg gccatcggtc tccttcgcgg aaggtaccaa gtttgcacca
1861 cagagtcgcc gaagctcagg ggagctctcc agcccgctcc gaaagcccaa gaggctctcc
1921 cggggggcgc agtcgggtcc tgagggccgg gaagccgaag agtccacagg cccagacgaa
1981 gcagaagccc ccgagtcctt tccggcggct gccagtcccg gggattcagc cactggccac
2041 cggcggcccc cacttggtag ccggacagtg gctgagcacg tggaagccat tgagggcagc
2101 gtccaggaga gctcgggccc tgtgaccacg atctacatgc tggcagggaa gccccgcgga
2161 tccgaaggcc ctgtccgctc tgtcttccgc cattttggta gcttccagaa aggccaggcg
2221 gaagccaagg tcaagagggc catccctaag cctccgcgcc aggccctgaa tcggaaaaag
2281 ggcagccctg gccttgcctc tggctctgtc ggccagagcc ccaactcagc cccaaaagct
2341 gggcttcctg gggccacagg gcctatggca gtcagaccag aggaagcggt ccgggggctg
2401 ggggctggca ccgagagttc aaggagagcc caggagccag tctctggctg tggctcccca
2461 gaacaggatc cccagaagca ggctgaagag gaaaggcagg aggaacctga gtatgagaat
2521 gttgtaccca tctccaggcc accagaaccc tgatgacctt gaatttgggg agtggggaga
2581 gtggatggac tagactgtgc tgtgtgctgg aaaatgatcc cggggccagg acagacaaac
2641 cagagcctct gcgcctccac agggaaaagg caaggcttcc aggccagttg gcccaggccc
2701 ctggcagtgc tcccggaggg gcccaggaag gcctgggcag agaccctgta ggatggggtc
2761 aggaagggtt gcctgcaggg acttttgctc tgctgtcctg gaccctgtgt gcctcataag
2821 ggctattctt tctttcacgt gcaaaacatt tttctgaaat agcaaacaac ctacatgttt
2881 gctgataaaa gattggctaa acaaaatttt tttttttttt gagacagaat ctccctctgt
2941 cccccaggct ggagtgcagt ggtgcgatct cggctcactg caagctctgc ctcccgggtt
3001 cacgcccttc tcctgcctca gcctcccgag tagctgggac tacaggtgcc ctccaccacg
3061 cttggctaat ttttttgtat atttaataga gacagggttt caccatgtta gccaggatgg
3121 tctcgatctc ctgacctcgt gatccacctg cctcggcctc ccaaagtgct gggatgacag
3181 gcatgagcca ccacgcctgg tctatgaact ttttaaaaag gatgtatgtg tataaaaaca
3241 gattcaaggg aaaggcacta aatggttttt tcctctggaa gatgagattg taggtgatat
3301 ttattttctt ctgaaacttt tgtatagttt gcaaattttc tacagtgaac attctttttt
3361 acttttgtta ctagattgaa tttgataaag tataataaaa agcaatgatc tttgttaaaa
3421 aaataaaaag tactaacatt acaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//