LOCUS BC038118 2500 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens transmembrane channel-like 5, mRNA (cDNA clone
MGC:43308 IMAGE:5265527), complete cds.
ACCESSION BC038118
VERSION BC038118.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2500)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2500)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC038118.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33942079
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2500
/db_xref="H-InvDB:HIT000051998"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43308 IMAGE:5265527"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2500
/gene="TMC5"
/db_xref="GeneID:79838"
/db_xref="HGNC:HGNC:22999"
CDS 292..2235
/gene="TMC5"
/codon_start=1
/product="TMC5 protein"
/protein_id="AAH38118.1"
/db_xref="GeneID:79838"
/db_xref="HGNC:HGNC:22999"
/translation="MTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCC
IQCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNI
FSFILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSG
ASYNMQLAYIFTIGACLTTCFFSLLFSTAKYFRNNFINPHIYSGGITKLIFCWDFTVT
HEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCA
AVYYLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYV
LLIRNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLG
EFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMF
YSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGP
FRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQI
TEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLH
LGEHDGSLDLRSRRSVQEGNPRA"
BASE COUNT 664 a 581 c 569 g 686 t
ORIGIN
1 gagaaaactc ctcaggggtt agatgcaggg agttatgttg tgatttgtgt aggggtggct
61 ttggtgagct catcctggca ttttaaaaat aatgtgaatg gtgtatccct ttgtgatcat
121 catcactttt tccctgcgag tcccaatcaa tgcgggtgtg actgctgtat gaagtctcag
181 gaagcccacc ccagtggaga agaaggcttg caggaggcag gagatgctgt ccgatgacca
241 cgtgaatgaa atcatcatac aggacagaag ttaatcgcat cccttatacc catgacatcc
301 agagacagaa ttaaagccat caggaaccag ccaaggacca tggaagagaa aaggaacctt
361 aggaaaatag ttgacaaaga aaaaagcaaa cagacccatc gtatccttca gctcaattgc
421 tgtattcagt gtctgaactc catttcccgg gcttatcgga gatccaagaa cagcctgtcg
481 gaaattctga attccatcag cctgtggcag aagacgctga agatcattgg aggcaagttt
541 ggaaccagcg tcctctccta tttcaacttt ctgagatggc ttttgaagtt caacattttc
601 tcattcatcc tgaacttcag cttcatcata atccctcagt ttaccgtggc caaaaagaac
661 accctccagt tcactgggct ggagtttttc actggggtgg gttattttag ggacacagtg
721 atgtactatg gcttttacac caattccacc atccagcacg ggaacagcgg ggcatcctac
781 aacatgcagc tggcctacat cttcacaatc ggagcatgct tgaccacctg cttcttcagt
841 ttgctgttca gcacggccaa gtatttccgg aacaacttca ttaatcccca catttactcc
901 ggagggatca ccaagctgat cttttgctgg gacttcactg tcactcatga aaaagctgtg
961 aagctaaaac agaagaatct tagcactgag ataagggaga acctgtcaga gctccgtcag
1021 gagaattcca agttgacgtt caatcagctg ctgacccgct tctctgccta catggtagcc
1081 tgggttgtct ctacaggagt ggccatagcc tgctgtgcag ccgtttatta cctggctgag
1141 tacaacttag agttcctgaa gacacacagt aaccctgggg cggtgctgtt actgcctttc
1201 gttgtgtcct gcattaatct ggccgtgcca tgcatctact ccatgttcag gcttgtggag
1261 aggtacgaga tgccacggca cgaagtctac gttctcctga tccgaaacat ctttttgaaa
1321 atatcaatca ttggcattct ttgttactat tggctcaaca ccgtggccct gtctggtgaa
1381 gagtgttggg aaaccctcat tggccaggac atctaccggc tccttctgat ggattttgtg
1441 ttctctttag tcaattcctt cctgggggag tttctgagga gaatcattgg gatgcaactg
1501 atcacaagtc ttggccttca ggagtttgac attgccagga acgttctaga actgatctat
1561 gcacaaactc tggtgtggat tggcatcttc ttctgccccc tgctgccctt tatccaaatg
1621 attatgcttt tcatcatgtt ctactccaaa aatatcagcc tgatgatgaa tttccagcct
1681 ccgagcaaag cctggcgggc ctcacagatg atgactttct tcatcttctt gctctttttc
1741 ccatccttca ccggggtctt gtgcaccctg gccatcacca tctggagatt gaagccttca
1801 gctgactgtg gcccttttcg aggtctgcct ctcttcattc actccatcta cagctggatc
1861 gacaccctaa gtacacggcc tggctacctg tgggttgttt ggatctatcg gaacctcatt
1921 ggaagtgtgc acttcttttt catcctcacc ctcattgtgc taatcatcac ctatctttac
1981 tggcagatca cagagggaag gaagattatg ataaggctgc tccatgagca gatcattaat
2041 gagggcaaag ataaaatgtt cctgatagaa aaattgatca agctgcagga tatggagaag
2101 aaagcaaacc ccagctcact tgttctggaa aggagagagg tggagcaaca aggctttttg
2161 catttggggg aacatgatgg cagtcttgac ttgcgatcta gaagatcagt tcaagaaggt
2221 aatccaaggg cctgatgact cttttggtaa cgagacacca atcaaataag gggaggagat
2281 gaaaatggaa tgatttcttc catgccacct gtgcctttag gaactgccca gaagaaaatc
2341 caaggcttta gccaggagcg gaaactgact accatgtaat tatcaaagta aaattgggca
2401 ttccatgcta tttttaatac ctggattgct gatttttcaa gacaaaatac ttggggtttt
2461 ccaataaaga ttgttgtaat atcgaaaaaa aaaaaaaaaa
//