LOCUS BC036556 3237 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens SET domain containing 4, mRNA (cDNA clone MGC:43390 IMAGE:5266627), complete cds. ACCESSION BC036556 VERSION BC036556.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3237) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3237) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC036556.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 73 Row: p Column: 10 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3237 /db_xref="H-InvDB:HIT000051742" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43390 IMAGE:5266627" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3237 /gene="SETD4" /db_xref="GeneID:54093" /db_xref="HGNC:HGNC:1258" CDS 398..1648 /gene="SETD4" /codon_start=1 /product="SETD4 protein" /protein_id="AAH36556.1" /db_xref="GeneID:54093" /db_xref="HGNC:HGNC:1258" /translation="MNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSL QEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHAGHRSLW KPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSLQPLF AEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPHVQ VKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRLLTALKLLCLEAEKFTCW KKVLLGEVISDTNEKTSLDIAQKICYYFIEETNAVLQKVSHMKDEKEALINQLTLVES LWTEELKILRASAETLHSLQTAFT" BASE COUNT 782 a 733 c 836 g 886 t ORIGIN 1 aggcaggcgc gacagccttc agcctctccc tctgcagttt tggccggttc ctttaacttg 61 ccttcatctg gggctgtttg gtatttccac gtgccttggg cccgcccact gcagcctcca 121 tcttggaagc ggccgccggc gcctagattg agcatttcca cagaaattac agttttgtcc 181 tttttgaaaa aatagaactg tatttcagaa aaaagaaact acagttttag catgcagaaa 241 ggaaaaggga gaacaagccg gatcagaaga cgaaaactct gcggaagttc tgaatcaaga 301 ggagagatgg ggtctttctg tgttgggcag gctgggctca aactcctggc ctcaagcagt 361 cctcccgcct tggcctccca aatgctggga atacagaatg aatgagagcc acaagtctga 421 atttatagag ctgaggaagt ggctgaaagc taggaagttt caagattcaa acttagcgcc 481 tgcttgtttt ccaggtacag gaagagggct gatgagtcaa acatccctgc aggagggaca 541 gatgattatt tcgttgcctg agagttgcct gctcactacg gacacagtga ttcgaagcta 601 cttaggggca tacattacta agtggaagcc tcctccatct cctctgctgg cgctgtgcac 661 ctttttagtt tcagaaaagc atgctgggca ccgatctctt tggaagcctt acctggagat 721 tttacccaag gcgtatacct gccctgtttg tttggagccg gaagtggtga accttcttcc 781 caaatcttta aaagcaaagg ctgaagagca gagagcccac gtgcaggagt tctttgcttc 841 ctccagagac tttttctctt ctctgcagcc tctgtttgcg gaggctgttg acagcatctt 901 cagctacagt gccctgctgt gggcttggtg caccgtcaac accagagccg tgtacctgag 961 gcccaggcag cgggaatgcc tttctgcaga gccggacacc tgtgcactcg ctccgtacct 1021 ggacctgctg aatcatagcc cacatgtcca ggtaaaagca gcgtttaatg aagaaactca 1081 ttcttacgaa attagaacga cttcacgttg gagaaagcat gaagaggtat tcatctgtta 1141 cggccctcac gataatcaac ggctgttcct ggaatacgga tttgtttctg tccataatcc 1201 tcatgcttgt gtttatgtct caagagaaat acttgttaaa tatcttccat caacagataa 1261 acagatggac aaaaagattt ctattttaaa ggatcatggc tatatagaaa atttgacatt 1321 tggatgggat ggaccatctt ggaggctact cacagccctt aagttgttat gtctggaagc 1381 tgagaaattt acatgctgga aaaaagtact tcttggggag gtaatttcag atacgaatga 1441 gaagacaagt ttggacatag cccagaaaat atgctattat ttcatagaag agactaatgc 1501 tgtgcttcaa aaggtgtctc atatgaagga tgaaaaagag gccctgataa accaactaac 1561 tttggtggaa tccttgtgga cggaagagct aaagattctc agggcatctg ccgagaccct 1621 gcacagtttg caaacagctt ttacctgatt tcaccgaagc gcatttggtc acctcctctg 1681 gtgggtgtta gtcacacatt ttagactaag gtttgatgga ctaaatttat atagtttaga 1741 gtcgatgagt tgtgtctact caacaattag gaacttaatc cttttccttt tgcttttcct 1801 acagaaacaa aagttaattt tgaagagcat catcatgggc tggggtggtg gctgccccca 1861 ggacatgcag gatttctgca gggggcagca caggttctgg gattgtgagg ctgtgagtga 1921 aggtggacaa gctgtctgga tggcaggtct aatgctcttc cgaataaagt gctgaactgt 1981 gaggagagag gcggactgtg aggcagccag gagccagctg cgtccgtgtg tggtctgtca 2041 ccacggggcc tgcttcttat ctgacacagc agctatcaga gtctagtggt tgtgctttta 2101 agatgctctg ataccattgg gttaaggggc agattggcgg tgggtgtggg gcagtgtgag 2161 gtagtcctgg atccccgcca gggtggccca gacgccagcc ctttcctgtg tggctgcact 2221 gaggtgggtg ttgaagagcc ccctagggga cacacagctt ccaggaggag ggaatgtcct 2281 ctaagcatgc tcctggcctc tcaaggtggc gcttgtctaa ttattcactt gggaagaatg 2341 actagctcag ccagcggctc tttctgcttt gttctggcga ctttcctggg caggcctttc 2401 cacctgggga gctggctcat cctgcacagc tgggccgtgg tgggcctgtc tgcttgattc 2461 tggggttcag tgtaggtcag ctgatggcga accatggtgg tggtttggct tctgttctta 2521 ttcttgagtt ttgataccac gcagaccttg ggtggggaga gcttcctgca cagctctcag 2581 cggcctgtgg ccttggaact gcctgcgtaa gtaacggagg ggctgctggt cctgttcagg 2641 cccgtgctgg ggacgccgct tagacaatgt tgcccagagt cctgtttacc ctcccagggt 2701 tcattcttcc caagaactca aattcctttc tcattggagc ctagtgaaac caaatgaacg 2761 ggacctgctg gcctcaggag gcaggcagag tttaaaataa aactttctca tgatttcttg 2821 aacatctttc cctgtttgta tatacacttt gtgtttattt ttcagtagct gcagtatatt 2881 ttttttcaat attcagtata atgcagtgta tttcatcata tgctgtatgg agagtgggca 2941 gacttctgtg gagggcccga tagtaaccat ttgaagcttt ctggacctgt ggtcttagtc 3001 ccagcgattc tgcagagcgg ccatcggcag catgtcaacc atttgcatgg ctgggctcca 3061 gggaaactac tgacaacgac aggtggtggg ccatagtttc ctgacccctg tgctatgcca 3121 gaatttcttt ttcctcttcc ctatgagtgg acctaaatat gttaattcct tttcaccttt 3181 caaaacggac agccccttga acattaaaaa ctttgcagac ccaaaaaaaa aaaaaaa //