LOCUS BC036445 4178 bp mRNA linear HUM 22-FEB-2007 DEFINITION Homo sapiens aggrecan, mRNA (cDNA clone IMAGE:4823544), complete cds. ACCESSION BC036445 VERSION BC036445.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4178) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4178) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-AUG-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 33 Row: g Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4501990 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..4178 /db_xref="H-InvDB:HIT000051698" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4823544" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4178 /gene="ACAN" /gene_synonym="AGCAN" /gene_synonym="CSPGCP" /gene_synonym="SEDK" /db_xref="GeneID:176" /db_xref="HGNC:HGNC:319" /db_xref="MIM:155760" CDS 346..2511 /gene="ACAN" /gene_synonym="AGCAN" /gene_synonym="CSPGCP" /gene_synonym="SEDK" /codon_start=1 /product="aggrecan" /protein_id="AAH36445.1" /db_xref="GeneID:176" /db_xref="HGNC:HGNC:319" /db_xref="MIM:155760" /translation="MTTLLWVFVTLRVITAAVTVETSDHDNSLSVSIPQPSPLRVLLG TSLTIPCYFIDPMHPVTTAPSTAPLAPRIKWSRVSKEKEVVLLVATEGRVRVNSAYQD KVSLPNYPAIPSDATLEVQSLRSNDSGVYRCEVMHGIEDSEATLEVVVKGIVFHYRAI STRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPRE GCYGDKDEFPGVRTYGIRDTNETYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRRL GARLATTGQLYLAWQAGMDMCSAGWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQ TGYPDPSSRYDAICYTGEDFVDIPENFFGVGGEEDITVQTVTWPDMELPLPRNITEGE ARGSVILTVKPIFEVSPSPLEPEEPFTFAPEIGATAFAEVENETGEATRPWGFPTPGL GPATAFTSEDLVVQVTAVPGQPHLPGGVVFHYRPGPTRYSLTFEEAQQACLRTGAVIA SPEQLQAAYEAGYEQCDAGWLRDQTVRYPIVSPRTPCVGDKDSSPGVRTYGVRPSTET YDVYCFVDRLEGEVFFATRLEQFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYA GWLADGSLRYPIVTPRPACGGDKPGVRTVYLYPNQTGLPDPLSRHHAFCFRGMQPHFG SNSPFCLERTPLGSPDPATTQYPIHQSKKMSVPLGQSQL" BASE COUNT 958 a 1233 c 1082 g 905 t ORIGIN 1 agcggagtgc tgaggacgcg cgcagcgctg ctcaaggtct ctctctctca gcaccctcgc 61 cggccggcgt ctgacgcggg tgccagggtc tccgggcacc tttcagtgtc cattccctca 121 gccagccagg actccgcaac ccagcagttg ccgctgcggc cacagcccga ggggacctgc 181 ggacaggacg ccggcaggag gaggggtgcg cagcgcccgc gcagagcgtc tccctcgcta 241 cgcagcgaga cccgggcctc ccggccccag gagcccccag ctgcctcgcc aggtgtgtgg 301 gactgaagtt cttggagaag ggagtccaac tcttcaaggt gaactatgac cactttactc 361 tgggttttcg tgactctgag ggtcatcact gcagctgtca ctgtagaaac ttcagaccat 421 gacaactcgc tgagtgtcag catcccccaa ccgtccccgc tgagggtcct cctggggacc 481 tccctcacca tcccctgcta tttcatcgac cccatgcacc ctgtgaccac cgccccttct 541 accgccccac tggccccaag aatcaagtgg agccgtgtgt ccaaggagaa ggaggtagtg 601 ctgctggtgg ccactgaagg gcgcgtgcgg gtcaacagtg cctatcagga caaggtctca 661 ctgcccaact acccggccat ccccagtgac gccaccttgg aagtccagag cctgcgctcc 721 aatgactctg gggtctaccg ctgcgaggtg atgcatggca tcgaggacag cgaggccacc 781 ctggaagtcg tggtgaaagg catcgtgttc cattacagag ccatctctac acgctacacc 841 ctcgactttg acagggcgca gcgggcctgc ctgcagaaca gtgccatcat tgccacgcct 901 gagcagctgc aggccgccta cgaagacggc ttccaccagt gtgacgccgg ctggctggct 961 gaccagactg tcagataccc catccacact ccccgggaag gctgctatgg agacaaggat 1021 gagtttcctg gtgtgaggac gtatggcatc cgagacacca acgagaccta tgatgtgtac 1081 tgcttcgccg aggagatgga gggtgaggtc ttttatgcaa catctccaga gaagttcacc 1141 ttccaggaag cagccaatga gtgccggcgg ctgggtgccc ggctggccac cacgggccag 1201 ctctacctgg cctggcaggc tggcatggac atgtgcagcg ccggctggct ggccgaccgc 1261 agcgtgcgct accccatctc caaggcccgg cccaactgcg gtggcaacct cctgggcgtg 1321 aggaccgtct acgtgcatgc caaccagacg ggctaccccg acccctcatc ccgctacgac 1381 gccatctgct acacaggtga agactttgtg gacatcccag aaaacttctt tggagtgggg 1441 ggtgaggagg acatcaccgt ccagacagtg acctggcctg acatggagct gccactgcct 1501 cgaaacatca ctgagggtga agcccgaggc agcgtgatcc ttaccgtaaa gcccatcttc 1561 gaggtctccc ccagtcccct ggaacccgag gagcccttca cgtttgcccc tgaaataggg 1621 gccactgcct tcgctgaggt tgagaatgag actggagagg ccaccaggcc ctggggcttt 1681 cccacacctg gcctgggccc tgccacggca ttcaccagtg aggacctcgt cgtgcaggtg 1741 accgctgtcc ctgggcagcc gcatttgcca gggggggtcg tcttccacta ccgcccggga 1801 cccacccgct actcgctgac ctttgaggag gcacagcagg cctgcctgcg cacgggggcg 1861 gtcattgcct cgccggagca gctccaggcc gcctacgaag caggctatga gcagtgtgac 1921 gccggctggc tgcgggacca gaccgtcaga taccccattg tgagcccccg gaccccatgc 1981 gtgggtgaca aggacagcag cccaggggtc aggacctatg gcgtgcgccc atcaacagag 2041 acctacgatg tctactgctt tgtagacaga cttgaggggg aggtgttctt cgccacacgc 2101 cttgagcagt tcaccttcca ggaagcactg gagttctgtg aatctcacaa tgccacgctg 2161 gccaccacgg gccagctcta cgccgcctgg agccgcggcc tggacaagtg ctatgccggc 2221 tggctggccg acggcagcct ccgctacccc atcgtcaccc caaggcctgc ctgcggtggg 2281 gacaagccag gcgtgagaac ggtctacctc taccctaacc agacgggcct cccagaccca 2341 ctgtcccggc accatgcctt ctgcttccga ggtatgcagc ctcacttcgg ctccaacagc 2401 cccttttgtc tggagaggac cccactgggt tcaccggatc ctgccaccac ccagtatccc 2461 atccatcaga gcaagaaaat gtcagtccct ctggggcaga gccagctctg aaaccagcac 2521 aacgcaggct ttgaccccaa ggcaaggtca tccttctaaa gttccccaga gacaagtaga 2581 gataaataag aacttgagct ggtatttatg tctactagat atgaagcaga cctgaatttg 2641 agttatggct ctgctactta atagctgtgt gaaaatggag atatgatggt tcctacttca 2701 gagagagctg caagaattaa ttaagtgcac gtggtgccct tggcatagtg cctgggacac 2761 agtaaatgct caataaatgt tagctttatt tcatatacat atctatatgt aaagctgtaa 2821 tatatagctt tattttgtac aacctgtaat ttgtacactc ttgtcaaatt ctctcctgct 2881 tgcaaatatt tttgtgatga gtttagtcaa attattctat tattcttcac taagcactgg 2941 tggttcaagt ttttcgttga cctatgctat ggatatgcta ccatttcaac catcactccc 3001 cactggactt ctgagagtga tgtcatcaag caatatagta agcatggcca gggcatagcc 3061 acggaattgc tgggctctgg atgagttcct gcagagtcca tggagggtct gggtgcatgg 3121 accagaatgt agattgtaat aacagcctgt gccatgtttt atagtttaca tcaaaactga 3181 gtgtctttgc aacttcctgt gaatctagaa ttattctcaa ataaacttaa ggggaaaaaa 3241 cttgagtgtc cccaagtttc ccagacatcc agggtcacct tttaaaaccc aattcaaggc 3301 caggagcagt ggcttacgcc tgtaatccca gcactttggg aggccaaggc aggcagatca 3361 cttgaggtta ggagttcgag atcagcctgg ccaacatggt gaaaccctgt ctctactaaa 3421 aaaaagtgca aaaattagcc tagtttggtg gtgtgtacct gtaatcccag ctactaggga 3481 ggctgaggca ggagaatcac ctcaacccag gaggcggagg ttgcagtgag ccgagattat 3541 tctgctctac tccagcctgg gcagcagagc aagactctgt ctcaaaaaaa aaaaaaaaaa 3601 ttcaaagttc agccagcctc aataagtcaa gtccaattct ctcccagagg ctttgatgag 3661 gctcttgtcc cagtgcccct tccctgctct gggaagcaga aaccaagcca gttaacctcc 3721 cagaaatttc ccagccatgc tgcccccagc ctcccacccc tgaccctccg tgaactcagc 3781 cttgtgtatt atcctgcaca gttcagcttc cttgctgacc aagcccactg ctggtttccc 3841 ccacaccagt acagttaccc ccagcccatg aatcctgcct tcacgctttc aaatgccgag 3901 atggtttcat ggaattgagt accatcctcc tatttttggt cgtgacacac ttggaacata 3961 atccctgtcc cccaaggttg ttcagtagtt gagagcgtgg agtctggtac cagatgctta 4021 aattcaaaga ctagatctga catttgtaag ccattgtctc tgggcaaatc atgtaactct 4081 gtgcctcagt ttccccatct gtaaaatgag ataatcatat ctctctcata aagctgttgt 4141 gagataaagt gattttagat acaaaaaaaa aaaaaaaa //