LOCUS BC036103 3870 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens dystrophin, mRNA (cDNA clone IMAGE:5274415), complete
cds.
ACCESSION BC036103
VERSION BC036103.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3870)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3870)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: f Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5032280
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3870
/db_xref="H-InvDB:HIT000094257"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5274415"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3870
/gene="DMD"
/gene_synonym="BMD"
/gene_synonym="CMD3B"
/gene_synonym="DXS142"
/gene_synonym="DXS164"
/gene_synonym="DXS206"
/gene_synonym="DXS230"
/gene_synonym="DXS239"
/gene_synonym="DXS268"
/gene_synonym="DXS269"
/gene_synonym="DXS270"
/gene_synonym="DXS272"
/db_xref="GeneID:1756"
/db_xref="HGNC:HGNC:2928"
/db_xref="MIM:300377"
CDS 177..2495
/gene="DMD"
/gene_synonym="BMD"
/gene_synonym="CMD3B"
/gene_synonym="DXS142"
/gene_synonym="DXS164"
/gene_synonym="DXS206"
/gene_synonym="DXS230"
/gene_synonym="DXS239"
/gene_synonym="DXS268"
/gene_synonym="DXS269"
/gene_synonym="DXS270"
/gene_synonym="DXS272"
/codon_start=1
/product="DMD protein"
/protein_id="AAH36103.1"
/db_xref="GeneID:1756"
/db_xref="HGNC:HGNC:2928"
/db_xref="MIM:300377"
/translation="MEDEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLD
LLEGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGL
IWNIILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLA
LNALIHSHRPDLFDWNSVVCQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKK
SILMYITSLFQVLPQQVSIEAIQEVEMLPRPPKVTKEEHFQLHHQMHYSQQITVSLAQ
GYERTSSPKPRFKSYAYTQAAYVTTSDPTRSPFPSQHLEAPEDKSFGSSLMESEVNLD
RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNIL
QLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQKLK
ELNDWLTKTEERTRKMEEEPLGPDLEDLKRQVQQHKVLQEDLEQEQVRVNSLTHMVVV
VDESSGDHATAALEEQLKVLGDRWANICRWTEDRWVLLQDILLKWQRLTEEQCLFSAW
LSEKEDAVNKIHTTGFKDQNEMLSSLQKLAVLKADLEKKKQSMGKLYSLKQDLLSTLK
NKSVTQKTEAWLDNFARCWDNLVQKLEKSTAQISQAVTTTQPSLTQTTVMETVTTVTT
REQILVKHAQEELPPPPPQKKRQITVDSEIRKRLDVDITELHSWITRSEAVLQSPEFA
IFRKEGNFSDLKEKVNVGYALIFISVLILCCL"
BASE COUNT 1321 a 677 c 763 g 1109 t
ORIGIN
1 atgggaaagg ggagctgttg gaattcaaat agactttctg gttcccagca gtcggcagta
61 atagaatgct ttcaggaaga tgacagaatc aggagaaaga tgctgttttg cactatcttg
121 atttgttaca gcagccaact tattggcatg atggagtgac aggaaaaaca gctggcatgg
181 aagatgaaag agaagatgtt caaaagaaaa cattcacaaa atgggtaaat gcacaatttt
241 ctaagtttgg gaagcagcat attgagaacc tcttcagtga cctacaggat gggaggcgcc
301 tcctagacct cctcgaaggc ctgacagggc aaaaactgcc aaaagaaaaa ggatccacaa
361 gagttcatgc cctgaacaat gtcaacaagg cactgcgggt tttgcagaac aataatgttg
421 atttagtgaa tattggaagt actgacatcg tagatggaaa tcataaactg actcttggtt
481 tgatttggaa tataatcctc cactggcagg tcaaaaatgt aatgaaaaat atcatggctg
541 gattgcaaca aaccaacagt gaaaagattc tcctgagctg ggtccgacaa tcaactcgta
601 attatccaca ggttaatgta atcaacttca ccaccagctg gtctgatggc ctggctttga
661 atgctctcat ccatagtcat aggccagacc tatttgactg gaatagtgtg gtttgccagc
721 agtcagccac acaacgactg gaacatgcat tcaacatcgc cagatatcaa ttaggcatag
781 agaaactact cgatcctgaa gatgttgata ccacctatcc agataagaag tccatcttaa
841 tgtacatcac atcactcttc caagttttgc ctcaacaagt gagcattgaa gccatccagg
901 aagtggaaat gttgccaagg ccacctaaag tgactaaaga agaacatttt cagttacatc
961 atcaaatgca ctattctcaa cagatcacgg tcagtctagc acagggatat gagagaactt
1021 cttcccctaa gcctcgattc aagagctatg cctacacaca ggctgcttat gtcaccacct
1081 ctgaccctac acggagccca tttccttcac agcatttgga agctcctgaa gacaagtcat
1141 ttggcagttc attgatggag agtgaagtaa acctggaccg ttatcaaaca gctttagaag
1201 aagtattatc gtggcttctt tctgctgagg acacattgca agcacaagga gagatttcta
1261 atgatgtgga agtggtgaaa gaccagtttc atactcatga ggggtacatg atggatttga
1321 cagcccatca gggccgggtt ggtaatattc tacaattggg aagtaagctg attggaacag
1381 gaaaattatc agaagatgaa gaaactgaag tacaagagca gatgaatctc ctaaattcaa
1441 gatgggaatg cctcagggta gctagcatgg aaaaacaaag caatttacat agagttttaa
1501 tggatctcca gaatcagaaa ctgaaagagt tgaatgactg gctaacaaaa acagaagaaa
1561 gaacaaggaa aatggaggaa gagcctcttg gacctgatct tgaagaccta aaacgccaag
1621 tacaacaaca taaggtgctt caagaagatc tagaacaaga acaagtcagg gtcaattctc
1681 tcactcacat ggtggtggta gttgatgaat ctagtggaga tcacgcaact gctgctttgg
1741 aagaacaact taaggtattg ggagatcgat gggcaaacat ctgtagatgg acagaagacc
1801 gctgggttct tttacaagac atccttctca aatggcaacg tcttactgaa gaacagtgcc
1861 tttttagtgc atggctttca gaaaaagaag atgcagtgaa caagattcac acaactggct
1921 ttaaagatca aaatgaaatg ttatcaagtc ttcaaaaact ggccgtttta aaagcggatc
1981 tagaaaagaa aaagcaatcc atgggcaaac tgtattcact caaacaagat cttctttcaa
2041 cactgaagaa taagtcagtg acccagaaga cggaagcatg gctggataac tttgcccggt
2101 gttgggataa tttagtccaa aaacttgaaa agagtacagc acagatttca caggctgtca
2161 ccaccactca gccatcacta acacagacaa ctgtaatgga aacagtaact acggtgacca
2221 caagggaaca gatcctggta aagcatgctc aagaggaact tccaccacca cctccccaaa
2281 agaagaggca gattactgtg gattctgaaa ttaggaaaag gttggatgtt gatataactg
2341 aacttcacag ctggattact cgctcagaag ctgtgttgca gagtcctgaa tttgcaatct
2401 ttcggaagga aggcaacttc tcagacttaa aagaaaaagt caatgtaggt tatgcattaa
2461 tttttatatc tgtactcatt ttgtgctgct tgtaaactcc gtgctttgtt atctgtgatt
2521 ctactagttg atagattaat gcgatatgat aaaatgctgt ttaatatgtc ttaaaaatat
2581 attttagata gcaagcaaaa tcaaagttta gcctagagaa atctttctgg attcttctgt
2641 gactgactag ggatgccttt cataaacttg ccttaactta catattattt aactataaat
2701 taacaatttt atgacattaa ttcatgttga ttcctttcat atactgttca gttacctcaa
2761 ggctaggcct tagcaagctt gcacaattgt gtagagtaga atagagtaaa atagaataga
2821 ataatataat agataccata cttaggacta tgtctatatt ctcactgtta tcaaaaagtt
2881 attctttata gtcatcaatt cctgtcatat attataagat atttaaattt cccagatatt
2941 tgtgtattac cttatctaaa aggtgtccag cctttctcag tatttacatg tggtagcaga
3001 tgctttgttg ttgttattcc cttctgagat ggtataattt tgaccttcac aaataggaag
3061 ttttattaat ttaatataaa gtgtttcatc tttagggaaa ttgtcaaggc tttaattttt
3121 caacttcaac aattataaaa catgcatctt tgtatatgat tggcaacagt ttgtaaaata
3181 atttctaaca ggcagagtaa ataaaatggg caagctaagg aagcagtgat tatgaatgaa
3241 aagtaatttt atccatggga agatcacatc taaatgtgta tattagctct gctttttctc
3301 tccaggattc aaatcatgaa gttcaaaatc cattgtattt ttacaaatac gacattacct
3361 cagttacaag ctaatgtttg ctgttggggt tggaactttt ggagatcaac aaaagatata
3421 tatatattct ggaaaaaaaa tctatttttt aggctgcttg aaaaagggaa gacaattttg
3481 tcaccagttc ttcttagagt taactactta taaattggaa agctatttta aattacttat
3541 tagctttata agacatgctg ttgtcagcat tataatagac tattctaaat tgtttcaaga
3601 aatgggaaat atgaaaactg aaagataata tataattgta gaaaattagc taaatgtctt
3661 ttttcaagta tacttctttg aaggtaaatt gtttgctgtg atttttgagg gaaattctct
3721 tagtagtaga aaattaatta gagaacatta aactctaatt ttcaaacatc atgttacata
3781 tttgaccact gaaagtatga atcaccttta gcattttatt agctaattaa aaatgattat
3841 tgatctgatt ctcacaaaaa aaaaaaaaaa
//