LOCUS BC034810 3714 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens zinc finger protein 550, mRNA (cDNA clone MGC:41917 IMAGE:4823435), complete cds. ACCESSION BC034810 VERSION BC034810.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3714) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3714) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 71 Row: i Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40255150 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3714 /db_xref="H-InvDB:HIT000051244" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:41917 IMAGE:4823435" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3714 /gene="ZNF550" /db_xref="GeneID:162972" /db_xref="HGNC:HGNC:28643" CDS 185..1426 /gene="ZNF550" /codon_start=1 /product="ZNF550 protein" /protein_id="AAH34810.1" /db_xref="GeneID:162972" /db_xref="HGNC:HGNC:28643" /translation="MLVTFKDVAVTFTREEWRQLDLAQRTLYREVMLETCGLLVSLGH RVPKPELVHLLEHGQELWIVKRGLSHATCAGDRAQVHTREPTTYPPVLSERAFLRGSL TLESSTSSDSRLGRARDEEGLLEMQKGKVTPETDLHKETHLGKVSLEGEGLGTDDGLH SRALQEWLSADVLHECDSQQPGKDALIHAGTNPYKCKQCGKGFNRKWYLVRHQRVHTG MKPYECNACGKAFSQSSTLIRHYLIHTGEKPYKCLECGKAFKRRSYLMQHHPIHTGEK PYECSQCRKAFTHRSTFIRHNRTHTGEKPFECKECEKAFSNRARLIQHYIIHTGEKPY DCMACGKAFRCSSELTQHQRIHTGEKPYECTQCGKAFHRSTYLIQHSVIHTGEMPYKC IECGKAFKRRSHLLQHQRVHT" BASE COUNT 1053 a 768 c 856 g 1037 t ORIGIN 1 gacgtttgtg gtggggcgtg ttggtccgcg ctctcagaac tgtgctggga aggatggtag 61 ggcgactggg gctcacctcc gcaccgttgt aggacccggg gtagggtttt gagcccgtgg 121 gagctgcccc acgcggcctc gtcctgccaa cggtcggatg gcggagacga aggacgcagc 181 gcagatgttg gtgaccttca aggatgtggc tgtgaccttt acccgggagg agtggagaca 241 gctggacctg gcccagagga ccctgtaccg agaggtgatg ctggagacct gtgggcttct 301 ggtttcacta gggcatcggg ttcccaaacc agagttggtc cacctgctag agcatgggca 361 ggagctgtgg atagtgaaga gaggcctctc acatgctacc tgtgcaggtg acagagcaca 421 agttcatacc agagagccaa ccacttaccc gccagtctta tctgagcggg cctttctccg 481 gggaagcctg actctggaat cttcaacctc aagtgattcg aggttgggga gagctaggga 541 tgaggaaggg cttttggaaa tgcagaaagg taaagtgaca ccggagacag acctccacaa 601 ggagacccat cttgggaaag tgagccttga aggtgaaggt ttggggacag atgatggtct 661 gcactccagg gcattacaag agtggttatc agcagatgtt ctccatgaat gtgactcaca 721 gcaaccaggg aaagacgcct tgattcatgc agggacaaac ccctacaaat gcaagcagtg 781 tgggaaaggt tttaacagga agtggtatct cgttcgacat cagagggttc acactggaat 841 gaaaccctat gaatgcaatg catgtgggaa agcctttagc cagagctcaa ctctcattcg 901 gcactacctc atccacaccg gggagaaacc atacaagtgc cttgagtgtg ggaaggcctt 961 caaacgcagg tcgtacctca tgcagcacca tccaatccac actggagaga aaccctatga 1021 gtgtagtcag tgtcgaaagg ccttcaccca ccggtctact tttattcgcc ataataggac 1081 ccacactgga gaaaagccct ttgagtgcaa agaatgtgag aaagccttta gcaatagagc 1141 ccgcctaatt caacattaca tcatccacac tggagagaag ccctatgatt gcatggcatg 1201 tggaaaggcc ttcagatgca gctcagaact cacacagcac cagcggattc acactgggga 1261 gaagccctat gaatgcaccc agtgtgggaa agcctttcac cggagcacgt acctcattca 1321 gcactctgtc atccacactg gggagatgcc ctacaagtgt atcgagtgtg ggaaggcctt 1381 caaacgcagg tcacaccttc tgcagcacca aagggtccat acatgagaga accctattgc 1441 tgcaatgaat acagcaaggc ctttacccac tgttatttta tcattcataa tgggacccac 1501 actgtaggaa gaagtccttc gagtgcaaag aatgtcagga aacttttcat tttttttgtc 1561 agctctttct taactaacac atgagcagtc actttggaga gaagccctgt gaatacagtg 1621 aatgtaagga tcccttcagt caccactcag ttctcactca ttgcagaagg attcatacca 1681 gggggaaatg tggaaggcat tccatcaaca tcagagaact catgctggag aaagacattc 1741 caaatataac tattaaggac agtctttggc cagagcagaa atcttactat ctgagaatca 1801 taatgaaaag ttactacata attgttattg atgtgagaaa actttgtgac caggttgtca 1861 cttgcttgtc ctataaagag ccatgctgga atttgaccca ccttgggatt ttctctatga 1921 acttatgaaa accttcagtt acaggacaga gtgcacagtt tcctctcctg tgggaaggag 1981 agttgactct tgaggacccc caccctcctg catcctctct ctggaaggct gcatgtattg 2041 tagctgtggc tgtacttgta cctaaggccc tgggttcaag agagttggag aaacccctct 2101 agaaacatat tggctgtcat caaagggttc tttccaggcc tgaggaccta ggccccagtt 2161 tgtcccaaag caggagtgtt ttccatggga taaaggacac cctaggtttt tcttagcttc 2221 cagctctttc catacagtct tcactcaagt gtttggtaca aggatctact atgaacttgc 2281 tgctgtgata gaaaaactgc ttaaggttga aaagagaaat ctaagaaatt gctgacggaa 2341 taaaaacata atagaactac aacaccgaag gaaatgaaag aagcaagaag gaaagcacca 2401 gaagtgattt ggaagagaaa tcctaaaatg aatgtgaaca acagagtgat cagaagagtg 2461 tagggaatta atagtttctt taaacaagcc atctcacaat ggaagcctgt gtgtcttgaa 2521 attgctgtgg ttattattca ctctgccctt tgaagaactg cagaaattca tagggcaatg 2581 ttaagtgttt gtgtctccaa aaaagatgtt ggagtcgtta ccctcagaac ctcaggtaat 2641 catgttagtt aatccattag gttagttcct aattgactat gactgtgtcc ttagaaaaat 2701 gggaaatttg gtcacagagg cagatgtaca gagggaagac gatgtgaaga cacaggaaga 2761 acatcttcaa gccaaggaac acacggggct accagaagcc gagatagaag catggaacat 2821 atgttctagt aagaagtgtc tgggttgttt tggttttttt tctttggagt ttttgtggta 2881 ttaaattatt tttaaattat gttttattgt agacctcaca attctttttt tttctttttc 2941 actcaaacta cagcaaaata ttatatttct atcctatatt tcatgggctt acctctagcc 3001 aattgttttt aactgccatg taatatttta catcatgaag ctttcatcct tgattcaaat 3061 cctctgatta tggacatgta tttcctccat tttcctgcta tgaaatatat caccaccagc 3121 ttgattcaac cttaaaaata aggtcatcag tattatgttc taaataaact tatggccata 3181 catgagaaat gtaccttgca gctgaatggc taggtcatat ggtgatctag tatgtaactg 3241 gaattatgtt atacattgcc cttcctctcc cataagatgg acaaaagtgt ttctgtatca 3301 ctgtgtccca gacaatattt agaattaccc agctttccag tttttacttt agaagtttaa 3361 agtgatatag aatatatctg gtatttctca tattgaaata catttgaaca ttagttcata 3421 tcctttcatt gccttttgtt tttcctcttc tgtcaatggt ctactcatat gttggcctgt 3481 ctttatttgt atcttgactt tttattgtgt attttgttta tggtggggta ctttattggt 3541 gattaatacg attttcaagt atattatatg ggctagtccc ttgatactat tgacactgta 3601 tttatcttca gtctcttgtt ggtatctaac tttggttctg aagtttatgg aatggaagta 3661 tttaattgga aagattaaac atattgattt taattaacaa aaaaaaaaaa aaaa //