LOCUS BC032227 4499 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens zinc finger, FYVE domain containing 16, mRNA (cDNA
clone IMAGE:5204515), with apparent retained intron.
ACCESSION BC032227
VERSION BC032227.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4499)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4499)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: f Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281465
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4499
/db_xref="H-InvDB:HIT000041454"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5204515"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 1471 a 805 c 927 g 1296 t
ORIGIN
1 ggatctggca ctcccaggac tcccggccgg ggtagctctt cactcctcag cgcgacgtcg
61 tgtcgagttc ccaaaaagct ccgcaggggc tgtagggagg catacaagaa ttaaattctg
121 aataagtctg caggtaggat ggacagttat tttaaagcag ctgtcagtga cttggacaaa
181 ctccttgatg attttgaaca gaacccagat gaacaagatt atctccaaga tgtacaaaat
241 gcatatgatt ctaaccactg ctcagtttct tcagagttgg cttcctcaca gcgaacttca
301 ttgctcccaa aagaccaaga gtgcgttaat agttgtgcct catcagaaac aagctatgga
361 acaaatgaga gttccctgaa tgaaaaaaca ctcaagggac ttacttctat acaaaatgaa
421 aaaaatgtaa caggacttga tcttctttct tctgtggatg gtggtacttc agatgaaatc
481 cagccgttat atatgggacg atgtagtaaa cctatctgtg atctgataag tgacatgggt
541 aacttagttc atgcaaccaa tagtgaagaa gatattaaaa aattattgcc agatgatttt
601 aagtctaatg cagattcctt gattggattg gatttatctt cagtgtcaga tactccctgt
661 gtttcttcaa cagaccatga tagtgatact gtcagagaac aacagaatga taccagttct
721 gaattacaaa atagagaaat cggaggaatc aaagaattgg gtataaaagt agatacaaca
781 ctttcagatt cctataatta cagtggaaca gaaaatttaa aagataaaaa gatctttaat
841 cagttagaat caattgttga ttttaacatg tcatctgctt tgactcgaca aagttccaaa
901 atgtttcatg ccaaagacaa gctacaacac aagagccagc catgtggatt actaaaagat
961 gttggcttag taaaagagga agtagatgtg gcagtcataa ctgccgcaga atgtttaaaa
1021 gaagagggca agacaagtgc tttgacctgc agccttccga aaaatgaaga tttatgctta
1081 aatgattcaa attcaagaga tgaaaatttc aaattacctg acttttcctt tcaggaagat
1141 aagactgtta taaaacaatc tgcacaagaa gactcaaaaa gtttagacct taaggataat
1201 gatgtaatcc aagattcctc ttcagcttta catgtttcca gtaaagatgt gccgtcctca
1261 ttgtcctgtc ttcctgcgtc tgggtctatg tgtggatcat taattgaaag taaagcacgg
1321 ggtgattttt tacctcagca tgaacataaa gataatatac aagatgcagt gactatacat
1381 gaagaaatac agaacagtgt tgttctaggt ggggaaccat tcaaagagaa tgatcttttg
1441 aaacaggaaa aatgtaaaag catactcctt cagtcattaa ttgaagggat ggaagacaga
1501 aagatagatc ctgaccagac agtaatcaga gctgagtctt tggatggtgg tgacaccagt
1561 tctacagttg tagaatctca agaggggctt tctggcactc atgtcccaga gtcttctgat
1621 tgttgtgaag gttttattaa tactttttca agcaatgata tggatgggca agacttagat
1681 tactttaata ttgatgaagg cgcaaaaagt ggcccactaa ttagtgatgc tgaacttgat
1741 gcctttctga cagaacagta tcttcagacc actaacataa agtcttttga agaaaatgta
1801 aatgactcta aatcgcaaat gaatcagata gatatgaaag gcttagatga tggaaacatc
1861 aataatatat atttcaatgc agaagcagga gctattgggg aaagtcatgg tattaatata
1921 atttgtgaaa cagttgataa acaaaataca atagaaaatg gcctttcttt aggagaaaaa
1981 agcactattc cagttcaaca agggttacct accagtaagt ctgagattac aaatcaatta
2041 tcagtctctg atattaacag tcaatctgtt ggaggggcca gacctaagca attgtttagc
2101 cttccatcaa gaacaaggag ttcaaaggac ctgaataagc cagatgttcc agatacaata
2161 gaaagtgaac ccagcacagc agataccgtt gttccaatca cttgtgctat agattctaca
2221 gctgatccac aggttagctt caactctaat tacattgata tagaaagtaa ttctgaaggt
2281 ggatctagtt tcgtaactgc aaatgaagat tctgtacctg aaaacacttg caaagaaggc
2341 ttggttttgg gccagaaaca gcctacttgg gttcctgatt cagaagctcc aaactgtatg
2401 aactgccaag tcaaatttac ttttaccaaa cggcgacacc attgccgagc atgtgggaaa
2461 gtattttgtg gtgtctgttg taataggaag tgtaaactgc aatatctaga aaaggaagca
2521 agagtatgtg tagtctgcta tgaaactatt agtaaagctc aggcatttga aaggatgatg
2581 agtccaactg gttctaatct taagtctaat cattctgatg aatgtactac tgtccagcct
2641 cctcaggaga accaaacatc cagtatacct tcaccagcaa ctttgccagt ctcagcactt
2701 aaacaaccag gtgttgaagg actatgttcc aaagaacaga agagagtatg gtttgcagat
2761 ggtatattgc ccaatggtga agttgcagat acaacaaaat tatcatctgg aagtaaaaga
2821 tgttctgaag actttagtcc tctctcacct gatgtgccta tgacagtaaa cacagtggat
2881 cattcccatt ctactacagt ggaaaagcca aacaatgaga caggagatat tacaagaaat
2941 gagataattc agagtcctat ttctcaggtt ccatcagtgg aaaaattgtc tatgaacaca
3001 ggaaatgagg ggttacctac ttctggttca tttacactag atgatgatgt ttttgcagaa
3061 actgaagaac catctagtcc tactggtgtc ttagttaaca gcaatttacc tattgctagt
3121 atttcagatt ataggttact gtgtgatatt aacaagtatg tctgcaataa gattagtctt
3181 ctacctaatg atgaggacag tttgccccca cttctggttg catctggaga aaagggatca
3241 gtgcctgtag tagaagaaca tccatctcat gagcagatca ttttgcttct tgaaggtgaa
3301 ggctttcatc ctgttacatt tgtcctaaat gctaatctac tcgtgaatgt caaattcata
3361 ttttattcct cagacaaata ttggtacttt tcaaccaatg gattgcatgg cttgggacag
3421 gcagaaatta ttattctatt gttatgtttg ccaaatgaag atactattcc taaggacatc
3481 ttcagactat ttatcaccat atataaggat gctctaaaag gaaaatacat agaaaacttg
3541 gacaatatta cctttactga gagttttctc agtagcaagg atcacggagg attcctgttt
3601 attacaccta cttttcagaa acttgatgat ctctcattac caagtaatcc ttttctttgt
3661 ggaattctta tccagaagct tgagattccc tgggcaaagg tttttcctat gcgtttaatg
3721 ttgagattgg gtgcagaata taaaggtaag ttttagagta ataagttaaa ttgcatattt
3781 tcaaatatac tgaatgtaaa gactttcagg gaatcattaa aatcaatttt aatggattaa
3841 tggaactact tttgttttgc tatgctttta aagttctaag acaaccctct tctactacca
3901 ggttggtcta gataactgtg gtatgtcttc aagtttctag atgttcataa gttcttttat
3961 tacctaaaac ttttcttctt aaatttcaga acaaaacaga aaactttcac agtgcaggtt
4021 gagtatgcca tatctgaaat gtattggatc agttttttgg attttggact ttttcagatt
4081 ttggaatatt cacagagtac ataccagttg agcatcccaa attcaaaatc tgaaatgctc
4141 cagtgagcat ttcttttgag catcacgttg gcatttgaaa aagttataga ccgggcatgg
4201 tggctcacgc ctgtactccc ggcactttgg gaggccaagg cgggcggatc acatgaggtc
4261 aggagttcga gaccagcctg gccggcatgg tggagccctg tctctactaa aaatacaaaa
4321 attggctggg tgaggtggcg ggcgcctgtg attgcagcta ctcgggaggc tgaggcagga
4381 gaatcgcctg aacccgggag gcagatttgc agtgagctaa gatcatgcct ctgcattcca
4441 gccagggtga cagagcgaga ctacgtctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//