LOCUS BC030808 2902 bp mRNA linear HUM 21-OCT-2003 DEFINITION Homo sapiens zinc finger, FYVE domain containing 16, mRNA (cDNA clone MGC:22300 IMAGE:4701661), complete cds. ACCESSION BC030808 VERSION BC030808.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2902) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2902) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 37 Row: a Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7662047. FEATURES Location/Qualifiers source 1..2902 /db_xref="H-InvDB:HIT000041147" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:22300 IMAGE:4701661" /tissue_type="Lung" /clone_lib="NIH_MGC_77" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..2902 /gene="ZFYVE16" /gene_synonym="ENDOFIN" /gene_synonym="KIAA0305" /db_xref="GeneID:9765" CDS 111..2540 /gene="ZFYVE16" /gene_synonym="ENDOFIN" /gene_synonym="KIAA0305" /codon_start=1 /product="ZFYVE16 protein" /protein_id="AAH30808.1" /db_xref="GeneID:9765" /translation="MDSYFKAAVSDLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVS SELASSQRTSLLPKDQECVNSCASSETSYGTNESSLNKKTLKGLTSIQNEKNVTGLDL LSSVDGGTSDEIQPLYMGRCSKPICDLISDMGNLVHATNSEEDIKKLLPDDFKSNADS LIGLDLSSVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTLSDS YNYSGTENLKDKKIFNQLESIVDFNMSSALTRQSSKMFHAKDKLQHKSQPCGLLKDVG LVKEEVDVAVITAAECLKEEGKTSALTCSLPKNEDLCLNDSNSRDENFKLPDFSFQED KTVIKQSAQEDSKSLDLKDNDVIQDSSSALHVSSKDVPSSLSCLPASGSMCGSLIESK ARGDFLPQHEHKDNIQDAVTIHEEIQNSVVLGGEPFKENDLLKQEKCKSILLQSLIEG MEDRKIDPDQTVIRAESLDGGDTSSTVVESQEGLSGTHVPESSDCCEGFINTFSSNDM DGQDLDYFNIDEGAKSGPLISDAELDAFLTEQYLQTTNIKSFEENVNDSKSQMNQIDM KGLDDGNINNIYFNAEAGAIGESHGINIICETVDKQNTIENGLSLGEKSTIPVQQGLP TSKSEITNQLSVSDINSQSVGGARPKQLFSLPSRTRSSKDLNKPDVPDTIESEPSTAD TVVPITCAIDSTADPQVSFNSNYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQK QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCV VCYETISKGEC" misc_feature 2334..2528 /gene="ZFYVE16" /gene_synonym="ENDOFIN" /gene_synonym="KIAA0305" /note="FYVE; Region: FYVE zinc finger. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related" /db_xref="CDD:pfam01363" BASE COUNT 997 a 497 c 575 g 833 t ORIGIN 1 ggggtagctc ttcactcctc agcgcgacgt cgtgtcgagt tcccaaaaag ctccgcaggg 61 gctgtaggga ggcatacaag aattaaattc tgaataagtc tgcaggtagg atggacagtt 121 attttaaagc agctgtcagt gacttggaca aactccttga tgattttgaa cagaacccag 181 atgaacaaga ttatctccaa gatgtacaaa atgcatatga ttctaaccac tgctcagttt 241 cttcagagtt ggcttcctca cagcgaactt cattgctccc aaaagaccaa gagtgcgtta 301 atagttgtgc ctcatcagaa acaagctatg gaacaaatga gagttccctg aataaaaaaa 361 cactcaaggg acttacttct atacaaaatg aaaaaaatgt aacaggactt gatcttcttt 421 cttctgtgga tggtggtact tcagatgaaa tccagccgtt atatatggga cgatgtagta 481 aacctatctg tgatctgata agtgacatgg gtaacttagt tcatgcaacc aatagtgaag 541 aagatattaa aaaattattg ccagatgatt ttaagtctaa tgcagattcc ttgattggat 601 tggatttatc ttcagtgtca gatactccct gtgtttcttc aacagaccat gatagcgata 661 ctgtcagaga acaacagaat gataccagtt ctgaattaca aaatagagaa atcggaggaa 721 tcaaagaatt gggtataaaa gtagatacaa cactttcaga ttcctataat tacagtggaa 781 cagaaaattt aaaagataaa aagatcttta atcagttaga atcaattgtt gattttaaca 841 tgtcatctgc tttgactcga caaagttcca aaatgtttca tgccaaagac aagctacaac 901 acaagagcca gccatgtgga ttactaaaag atgttggctt agtaaaagag gaagtagatg 961 tggcagtcat aactgccgca gaatgtttaa aagaagaggg caagacaagt gctttgacct 1021 gcagccttcc gaaaaatgaa gatttatgct taaatgattc aaattcaaga gatgaaaatt 1081 tcaaattacc tgacttttcc tttcaggaag ataagactgt tataaaacaa tctgcacaag 1141 aagactcaaa aagtttagac cttaaggata atgatgtaat ccaagattcc tcttcagctt 1201 tacatgtttc cagtaaagat gtgccgtcct cattgtcctg tcttcctgcg tctgggtcta 1261 tgtgtggatc attaattgaa agtaaagcac ggggtgattt tttacctcag catgaacata 1321 aagataatat acaagatgca gtgactatac atgaagaaat acagaacagt gttgttctag 1381 gtggggaacc attcaaagag aatgatcttt tgaaacagga aaaatgtaaa agcatactcc 1441 ttcagtcatt aattgaaggg atggaagaca gaaagataga tcctgaccag acagtaatca 1501 gagctgagtc tttggatggt ggtgacacca gttctacagt tgtagaatct caagaggggc 1561 tttctggcac tcatgtccca gagtcttctg attgttgtga aggttttatt aatacttttt 1621 caagcaatga tatggatggg caagacttag attactttaa tattgatgaa ggcgcaaaaa 1681 gtggcccact aattagtgat gctgaacttg atgcctttct gacagaacag tatcttcaga 1741 ccactaacat aaagtctttt gaagaaaatg taaatgactc taaatcgcaa atgaatcaga 1801 tagatatgaa aggcttagat gatggaaaca tcaataatat atatttcaat gcagaagcag 1861 gagctattgg ggaaagtcat ggtattaata taatttgtga aacagttgat aaacaaaata 1921 caatagaaaa tggcctttct ttaggagaaa aaagcactat tccagttcaa caagggttac 1981 ctaccagtaa gtctgagatt acaaatcaat tatcagtctc tgatattaac agtcaatctg 2041 ttggaggggc cagacctaag caattgttta gccttccatc aagaacaagg agttcaaagg 2101 acctgaataa gccagatgtt ccagatacaa tagaaagtga acccagcaca gcagataccg 2161 ttgttccaat cacttgtgct atagattcta cagctgatcc acaggttagc ttcaactcta 2221 attacattga tatagaaagt aattctgaag gtggatctag tttcgtaact gcaaatgaag 2281 attctgtacc tgaaaacact tgcaaagaag gcttggtttt gggccagaaa cagcctactt 2341 gggttcctga ttcagaagct ccaaactgta tgaactgcca agtcaaattt acttttacca 2401 aacggcgaca ccattgccga gcatgtggga aagtattttg tggtgtctgt tgtaatagga 2461 agtgtaaact gcaatatcta gaaaaggaag caagagtatg tgtagtctgc tatgaaacta 2521 ttagtaaagg tgagtgttaa cttgatatat tttcttccag taattgaata tatcttaaaa 2581 ttaattggat tgtgacaaag ataaacttct ttattttctt aaggcaagga cctagtgttg 2641 aattatctgg cttaggtggg acatcccaag gcttggtttc tcttcttttt gttccactct 2701 cacaattaat actaccaatc tggaaaggaa gcattcagtt tctggagtgg cagttcatta 2761 acttttaaca ggtaccaagt ccctaaatgc tgcatttcat ctgcctattt gtttttgtca 2821 tcatcattgt catgttaatc atcttaatct aaataaacac ttacagatac ctaaaaaaaa 2881 aaaaaaaaaa aaaaaaaaaa aa //