LOCUS BC027040 2531 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Smad nuclear interacting protein 1, mRNA (cDNA clone
MGC:30036 IMAGE:4540112), complete cds.
ACCESSION BC027040
VERSION BC027040.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2531)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2531)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21314719.
FEATURES Location/Qualifiers
source 1..2531
/db_xref="H-InvDB:HIT000040243"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:30036 IMAGE:4540112"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2531
/gene="SNIP1"
/gene_synonym="dJ423B22.2"
/gene_synonym="FLJ12553"
/gene_synonym="RP3-423B22.3"
/db_xref="GeneID:79753"
/db_xref="HGNC:HGNC:30587"
/db_xref="MIM:608241"
CDS 74..1264
/gene="SNIP1"
/gene_synonym="dJ423B22.2"
/gene_synonym="FLJ12553"
/gene_synonym="RP3-423B22.3"
/codon_start=1
/product="Smad nuclear interacting protein 1"
/protein_id="AAH27040.1"
/db_xref="GeneID:79753"
/db_xref="HGNC:HGNC:30587"
/db_xref="MIM:608241"
/translation="MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHR
RPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHH
STVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSG
QGQGRDRDTQNLQAQEEEREFYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEV
PAKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIH
RQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSG
NGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEIDRKDDEDEEEEEE
VSDS"
BASE COUNT 734 a 527 c 620 g 650 t
ORIGIN
1 gttaaactcg tcatttcctc cagctagagg agctcaactg atctgttttc tttcgcccag
61 ccaaaatcac agaatgaagg cggtgaagag cgaacgggag cgagggagcc ggcgaagaca
121 ccgggacggg gacgtggtgc tgccggcggg ggtggtagtg aagcaggagc gtctcagccc
181 agaagtcgca cctcccgccc accgccgtcc ggaccactcc ggtggtagcc cgtctccgcc
241 gaccagcgag ccggcccgct cgggccaccg cgggaaccga gcccgaggag ttagccggtc
301 cccacccaaa aagaaaaaca aggcctcagg gagaagaagc aagtctcctc gcagtaagag
361 aaaccgaagt cctcaccact caacagtcaa agtgaagcag gagcgtgagg atcatccccg
421 gagaggacgg gaggatcggc agcacaggga accatcagaa caggaacaca ggagagctag
481 gaacagtgac cgggacagac accggggcca ttcccaccaa aggagaacgt ctaacgagag
541 gcctgggagt gggcagggtc agggacggga tcgagacact cagaacctgc aggctcagga
601 agaagagcgg gagttttata atgccaggcg acgggagcat cgccagagga atgacgttgg
661 tggtggcggc agtgagtctc aggagttggt tcctcggcct ggtggcaaca acaaagaaaa
721 agaggtgccc gctaaagaaa aaccaagctt tgaactttct ggggcacttc ttgaggacac
781 caacactttc cggggtgtag tcattaaata tagtgagccc ccagaagcac gtatccccaa
841 aaaacggtgg cgtctctacc catttaaaaa tgatgaggtg cttccagtca tgtacataca
901 tcgacagagt gcgtacctac tgggtcgaca ccgccgcatt gcagacattc caattgatca
961 cccgtcttgt tcaaagcagc atgcggtctt tcaatatcgg cttgtggaat atacccgtgc
1021 tgatggcaca gttggccgaa gagtgaagcc ctacatcatt gaccttggct caggcaatgg
1081 aaccttctta aacaacaaac gtattgagcc acagagatac tatgaactaa aagaaaagga
1141 tgtactcaaa tttggattca gtagcagaga atacgtcttg ctccatgagt cgtcggacac
1201 ttctgaaata gacaggaaag atgacgagga tgaggaggag gaggaagaag tgtctgacag
1261 ctagcaaact aagaacccaa actattgata cacggtttcc ttcttggaag tctttgattg
1321 actcagagag cactatggtg gtgggtccag cactatggtg ctctctgtaa tgcctcttac
1381 tgccttaagt ctttcctctg ttgctgacca gattgtgtta ccatttgaat acactgacta
1441 atgtttgtta aactttttct gtggcacctt ggccacatgc ctgcaggcat ttgttttcag
1501 aacagtctca ccaattacaa cacaccgtgt tttagtagaa gtgttgtggt tttagttggt
1561 gctttcagaa ctgctgccta ggaaactata aacccttggt taaggggaaa tcatggcttg
1621 ttctctttgt acagttactt tatttatata ggtgttaagc tttgtggacc aggtgttttt
1681 cttttggggc gaacccctga gcagagaatc ttactaggct ttggttatca ccaaaacaac
1741 ctccagtata taccaaagct ttgacttgtt tgagctcttg agcttagaag ttgattttgc
1801 acttattttt ttggggggtg ggaatgtact gcagtcagta aacattattg actgtttaac
1861 ttaaacagat gctttatggc acctgctcaa gcccgtgact gtacagaagg atcctggttg
1921 ctaccagtgg gtgctgattc agcatcacaa gtgactgaaa ttggctgtgg atctgttctt
1981 tgtgaaagaa ttcctgattt ctccatggag catgtacaca acaattttga tcatattaac
2041 tgtacttcag ttttgcattt ttattcaaat gttatctctt tttttctttg agaaataaac
2101 tgtcactgat gtgacagcgt tctttcttta ttctaataac atgtatagat ctaaagcagg
2161 ttgtgttgtt tacatgtttc tacacatttc atcctttaaa aagttgttga gagaggttgt
2221 atttaccttc ccaaggttgg aaagcagggg aatttcccag tgtcctagtt ttccaccaga
2281 ggaatatgtg taagtagcaa agtatttgct gcttacatat agtgtgtatg tatgtatata
2341 tgtaaattgt gtgttaaaga gctgatactg attttcatat gacaatgtta ggcaaaggcc
2401 tccctgcatt tgaagagcag gttttcattt atatgtattt ttgggataaa aaaataaaat
2461 ttgtaaatat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2521 aaaaaaaaaa a
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