LOCUS BC025258 3515 bp mRNA linear HUM 04-AUG-2008 DEFINITION Homo sapiens T-box 3, mRNA (cDNA clone MGC:39139 IMAGE:5458526), complete cds. ACCESSION BC025258 VERSION BC025258.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3515) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3515) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: p Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 47419906. FEATURES Location/Qualifiers source 1..3515 /db_xref="H-InvDB:HIT000039867" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39139 IMAGE:5458526" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_47" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3515 /gene="TBX3" /gene_synonym="TBX3-ISO" /gene_synonym="XHL" /db_xref="GeneID:6926" /db_xref="HGNC:HGNC:11602" /db_xref="MIM:601621" CDS 391..2622 /gene="TBX3" /gene_synonym="TBX3-ISO" /gene_synonym="XHL" /codon_start=1 /product="T-box 3" /protein_id="AAH25258.1" /db_xref="GeneID:6926" /db_xref="HGNC:HGNC:11602" /db_xref="MIM:601621" /translation="MSLSMRDPVIPGTSMAYHPFLPHRAPDFAMSAVLGHQPPFFPAL TLPPNGAAALSLPGALAKPIMDQLVGAAETGIPFSSLGPQAHLRPLKTMEPEEEVEDD PKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADD CRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHG FTLAFPSDHATWQGNYSFGTQTILNSMHKYQPRFHIVRANDILKLPYSTFRTYLFPET EFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLTLQSMRVFDERHKKENG TSDESSSEQAAFNCFAQASSPAASTVGTSNLKDLCPSEGESDAEAESKEEHGPEACDA AKISTTTSEEPCRDKGSPAVKAHLFAAERPRDSGRLDKASPDSRHSPATISSSTRGLG AEERRSPVREGTAPAKVEEARALPGKEAFAPLTVQTDAAAAHLAQGPLPGLGFAPGLA GQQFFNGHPLFLHPSQFAMGGAFSSMAAAGMGPLLATVSGASTGVSGLDSTAMASAAA AQGLSGASAATLPFHLQQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASSAAASSSVH RHPFLNLNTMRPRLRYSPYSIPVPVPDGSSLLTTALPSMAAAAGPLDGKVAALAASPA SVAVDSGSELNSRSSTLSSSSMSLSPKLCAEKEAATSELQSIQRLVSGLEAKPDRSRS ASP" BASE COUNT 770 a 1047 c 914 g 784 t ORIGIN 1 gcagggctgg agtgtctatt tcgagctcag cggcagggct cgggcgcgag tcgagaccct 61 gctcgctcct ctcgcttctg aaaccgacgt tcaggagcgg ctttttaaaa acgcaaggca 121 caaggacggt cacccgcgcg actatgtttg ctgatttttc gccttgccct ctttaaaagc 181 ggcctcccat tctccaaaag acacttcccc tcctcccttt gaagtgcatt agttgtgatt 241 tctgcctcct tttctttttt ctttcttttt tgttttgctt tttcccccct tttgaattat 301 gtgctgctgt taaacaacaa caaaaaaaca acaaaacaca gcagctgcgg acttgtcccc 361 ggctggagcc cagcgccccg cctggagtgg atgagcctct ccatgagaga tccggtcatt 421 cctgggacaa gcatggccta ccatccgttc ctacctcacc gggcgccgga cttcgccatg 481 agcgcggtgc tgggtcacca gccgccgttc ttccccgcgc tgacgctgcc tcccaacggc 541 gcggcggcgc tctcgctgcc gggcgccctg gccaagccga tcatggatca attggtgggg 601 gcggccgaga ccggcatccc gttctcctcc ctggggcccc aggcgcatct gaggcctttg 661 aagaccatgg agcccgaaga agaggtggag gacgacccca aggtgcacct ggaggctaaa 721 gaactttggg atcagtttca caagcggggc accgagatgg tcattaccaa gtcgggaagg 781 cgaatgtttc ctccatttaa agtgagatgt tctgggctgg ataaaaaagc caaatacatt 841 ttattgatgg acattatagc tgctgatgac tgtcgttata aatttcacaa ttctcggtgg 901 atggtggctg gtaaggccga ccccgaaatg ccaaagagga tgtacattca cccggacagc 961 cccgctactg gggaacagtg gatgtccaaa gtcgtcactt tccacaaact gaaactcacc 1021 aacaacattt cagacaaaca tggatttact ttggccttcc caagtgatca cgctacgtgg 1081 caggggaatt atagttttgg tactcagact atattgaact ccatgcacaa ataccagccc 1141 cggttccaca ttgtaagagc caatgacatc ttgaaactcc cttatagtac atttcggaca 1201 tacttgttcc ccgaaactga attcatcgct gtgactgcat accagaatga taagataacc 1261 cagttaaaaa tagacaacaa cccttttgca aaaggtttcc gggacactgg aaatggccga 1321 agagaaaaaa gaaaacagct caccctgcag tccatgaggg tgtttgatga aagacacaaa 1381 aaggagaatg ggacctctga tgagtcctcc agtgaacaag cagctttcaa ctgcttcgcc 1441 caggcttctt ctccagccgc ctccactgta gggacatcga acctcaaaga tttatgtccc 1501 agcgagggtg agagcgacgc cgaggccgag agcaaagagg agcatggccc cgaggcctgc 1561 gacgcggcca agatctccac caccacgtcg gaggagccct gccgtgacaa gggcagcccc 1621 gcggtcaagg ctcacctttt cgctgctgag cggccccggg acagcgggcg gctggacaaa 1681 gcgtcgcccg actcacgcca tagccccgcc accatctcgt ccagcactcg cggcctgggc 1741 gcggaggagc gcaggagccc ggttcgcgag ggcacagcgc cggccaaggt ggaagaggcg 1801 cgcgcgctcc cgggcaagga ggccttcgcg ccgctcacgg tgcagacgga cgcggccgcc 1861 gcgcacctgg cccagggccc cctgcctggc ctcggcttcg ccccgggcct ggcgggccaa 1921 cagttcttca acgggcaccc gctcttcctg caccccagcc agtttgccat ggggggcgcc 1981 ttctccagca tggcggccgc tggcatgggt cccctcctgg ccacggtttc tggggcctcc 2041 accggtgtct cgggcctgga ttccacggcc atggcctctg ccgctgcggc gcagggactg 2101 tccggggcgt ccgcggccac cctgcccttc cacctccagc agcacgtcct ggcctctcag 2161 ggcctggcca tgtccccttt cggaagcctg ttcccttacc cctacacgta catggccgca 2221 gcggcggccg cctcctctgc ggcagcctcc agctcggtgc accgccaccc cttcctcaat 2281 ctgaacacca tgcgcccgcg gctgcgctac agcccctact ccatcccggt gccggtcccg 2341 gacggcagca gtctgctcac caccgccctg ccctccatgg cggcggccgc ggggcccctg 2401 gacggcaaag tcgccgccct ggccgccagc ccggcctcgg tggcagtgga ctcgggctct 2461 gaactcaaca gccgctcctc cacgctctcc tccagctcca tgtccttgtc gcccaaactc 2521 tgcgcggaga aagaggcggc caccagcgaa ctgcagagca tccagcggtt ggttagcggc 2581 ttggaagcca agccggacag gtcccgcagc gcgtccccgt agacccgtcc cagacacgtc 2641 ttttcattcc agtccagttc aggctgccgt gcactttgtc ggatataaaa taaaccacgg 2701 gcccgccatg gcgttagccc ttccttttgc agttgcgtct gggaaggggc cccggactcc 2761 ctcgagagaa tgtgctagag acagcccctg tcttcttggc gtggtttata tgtccgggat 2821 ctggatcaga ttctgggggc tcagaaacgt cggttgcatt gagctactgg gggtaggagt 2881 tccaacattt atgtccagag caacttccag caaggctggt ctgggtctct gcccaccagg 2941 cggggaggtg ttcaaagaca tctccctcag tgcggattta tatatatatt tttccttcac 3001 tgtgtcaagt ggaaacaaaa acaaaatctt tcaaaaaaaa aatccggaca agtgaacaca 3061 ttaacatgat tctgtttgtg cagattaaaa actttatagg gacttgcatt atcggttctc 3121 aataaattac tgagcagctt tgtttgggga gggaagtccc taccatcctt gtttagtcta 3181 tattaagaaa atctgtgtct ttttaatatt cttgtgatgt tttcagagcc gctgtaggtc 3241 tcttcttgca tgtccacagt aatgtatttg tggtttttat tttgaacgct tgcttttaga 3301 gagaaaacaa tatagccccc tacccttttc ccaatccttt gccctcaaat cagtgaccca 3361 agggaggggg ggatttaaag ggaaggagtg ggcaaaacac ataaaatgaa tttattatat 3421 ctaagctctg tagcaggatt catgtcgttc tttgacagtt ctttctcttt cctgtatatg 3481 caataacaag gttttaaaaa aaaaaaaaaa aaaaa //