LOCUS BC022523 2755 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens zinc finger protein 563, mRNA (cDNA clone MGC:26658
IMAGE:4794529), complete cds.
ACCESSION BC022523
VERSION BC022523.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2755)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2755)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: d Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21687236.
FEATURES Location/Qualifiers
source 1..2755
/db_xref="H-InvDB:HIT000039602"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26658 IMAGE:4794529"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2755
/gene="ZNF563"
/gene_synonym="FLJ34797"
/db_xref="GeneID:147837"
/db_xref="HGNC:HGNC:30498"
CDS 207..1637
/gene="ZNF563"
/gene_synonym="FLJ34797"
/codon_start=1
/product="zinc finger protein 563"
/protein_id="AAH22523.1"
/db_xref="GeneID:147837"
/db_xref="HGNC:HGNC:30498"
/translation="MDAVAFEDVAVNFTQEEWALLGPSQKNLYRYVMQETIRNLDCIR
MIWEEQNTEDQYKNPRRNLRCHMVERFSESKDSSQCGETFSLIRDSIVNNSICPGEDP
CQSAECEEVIMGHLSLNSHIRVDSGHKPHEYQEYGEKPHTHKQRGKAFSYHHSFQSRG
RPHTGKKRYECKECGKTFSSRRNLRRHMVVQGGNRPYKCKLCGKAFFWPSLLRMHERT
HTGEKPYECKQCSKAFPFYSSYRRHERMHTGEKPYECKQCSKALPDSSSYIRHERTHT
GEKPYTCKQCGKAFSVSSSLRRHETTHSAEKPYECKQCGKTFHHLGSFQIHMKRHTGD
RPHKCKICGKGFDRPSLVRYHERIHTGEKPYECKQCGKTLSHSSSFRRHMIMHTGGGP
HKCKICGKAFVYPSVCQRHEKSHSGEKPYECKQCGKALSHSSSFRRHMVMHTGDGPNK
CKVCGKAFVYPSVCQRHEKTHWRETI"
BASE COUNT 892 a 541 c 655 g 667 t
ORIGIN
1 gccaggttca aagagcccgc ggcgtcttca cgcccctgcg ctcagctcta gactcagtcg
61 ctcgctgaga gacgccctgg aacgtctgtg tagcctcagt cgctgagaga cgccctggaa
121 cgtctgtggc agcctctgtc acagtgggac ccgcactggc agcgggaggc agagggagga
181 ccctggaaca tcccggaagc cgggaaatgg acgcagtggc ctttgaggat gtggctgtga
241 acttcaccca ggaggaatgg gctttgctgg gtccatcaca gaagaattta tacagatatg
301 tgatgcaaga aaccatcagg aacctggact gtataagaat gatatgggaa gaacagaata
361 ctgaagatca gtacaaaaat cctaggagaa atctaagatg tcatatggta gagagattca
421 gtgaaagtaa agacagtagt cagtgtggag aaacatttag cctcattcga gatagtattg
481 tgaacaacag catttgtcct ggagaagatc catgtcaaag cgctgagtgt gaagaagtca
541 taatgggtca tttatccctt aatagccaca tcagagttga ttctggacac aaaccacatg
601 agtatcagga atatggagag aagccacata cacataaaca acgtgggaaa gccttcagtt
661 accatcactc ctttcagtcg cgtggaaggc ctcacactgg aaagaaacgc tatgagtgta
721 aggaatgtgg aaaaaccttc agttctcgta gaaaccttcg aagacacatg gtagtgcaag
781 gtggaaatag accttataaa tgtaagttgt gtgggaaagc ttttttttgg cccagtttat
841 tacgtatgca tgaaagaact cacactggag agaaaccgta tgaatgtaag cagtgttcta
901 aagcctttcc tttttacagt tcctatcgaa gacatgagag aatgcacact ggggagaaac
961 cgtatgaatg taagcagtgt tctaaagcct tgcctgattc cagttcctat ataagacatg
1021 aaagaactca cactggagag aaaccatata catgtaaaca gtgtgggaaa gccttcagtg
1081 tttccagttc ccttcgaaga catgaaacca ctcacagtgc agagaaaccc tatgagtgta
1141 agcaatgcgg gaaaacattt catcatcttg gaagctttca gatacacatg aaaaggcaca
1201 ctggagatcg acctcataaa tgtaagatat gtgggaaagg ctttgatcgt cccagtttag
1261 ttcgatatca tgaacgaatt cacactggag agaaacccta tgaatgcaag cagtgtggga
1321 aaacgttatc tcatagctca agctttcgaa gacacatgat aatgcacact ggaggtggac
1381 ctcataaatg caagatatgt gggaaagctt ttgtttatcc tagtgtatgt caaagacacg
1441 aaaagtctca cagtggagag aaaccctatg aatgcaagca gtgtgggaaa gcgttatctc
1501 atagctcaag ctttcgaaga catatggtaa tgcatacggg agatgggccg aataaatgca
1561 aggtatgtgg gaaagccttt gtttatccca gtgtatgtca aagacatgaa aagactcact
1621 ggagagaaac aatatgaatg taaactatta taaagccttc tatatttcca gttccctttg
1681 atatcatgaa taaacttaca ctggacagaa accctataaa tgtaaatgtg ggaaagcctt
1741 tcataatttt tattcctttc aaaatcatga aatatctcac actggagaga tgctgtatga
1801 tataaggaat gtgggaaagt gttcgatttt ttttttaaca ccattgtcaa cataaaacaa
1861 ctcacagagc agaaaaactc tgtgagtgta aaatatgtag ggaagccttc agtcattttg
1921 gtaacttaaa agtacatgag gctgggcaca gtggctcacg cctgtaatcc cagcacttag
1981 ggtgggcaaa ttgcttgacc tcaggaattt gaggcctgcc tgggcaaaat ggtgaaacca
2041 tgtctctaca aaaaatagaa aaagtagcag gtgtggtggt atgcccctgt agtcccagct
2101 acttgggagg ctgaggtggg aagatctctt gagccgaggg ggtgggggtt gcagtgagcc
2161 aagatgcact gcaccccagc ctgggcgaca gagccagacc ctgtctcaaa aaaaaaaaaa
2221 aagtacatga aaggattcac tctggagaga agtcatatga atgtaagaaa tgtagaaaat
2281 cattgagttc tctcaggtcc ttgcatagac ataaaaggac tcactggaga gatactctat
2341 aaatgtgtga aatgtaggga agtattcttt aatgttattt catttcagat agaaataatt
2401 ctcattggag ataaacgcta tgaatgtaaa cacatagtaa agccttaatt ttaagcctca
2461 gtttctttca aatacagtta tcccctaata tttgaggagc gtggttctac caccccctgg
2521 gcatacataa atcgacacat gccaagtcct tttttaaaaa tgacatattt ggtacaaaat
2581 tacccggatg tgatggcaca tgcctgtaat cccagctact caggaggctg aggcaggata
2641 atcacttgaa tccgggaggc ggaggttgcg gtgagccaag gtcgcgccac tgcactccag
2701 cctgggcagc aagagcaaaa caacctctgt cacacacaca aaaaaaaaaa aaaaa
//