LOCUS BC022012 1860 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens visinin-like 1, mRNA (cDNA clone MGC:26437
IMAGE:4823954), complete cds.
ACCESSION BC022012
VERSION BC022012.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1860)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1860)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC022012.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: h Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63252921.
FEATURES Location/Qualifiers
source 1..1860
/db_xref="H-InvDB:HIT000039348"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26437 IMAGE:4823954"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1860
/gene="VSNL1"
/gene_synonym="HLP3"
/gene_synonym="HPCAL3"
/gene_synonym="HUVISL1"
/gene_synonym="VILIP"
/db_xref="GeneID:7447"
/db_xref="HGNC:HGNC:12722"
/db_xref="MIM:600817"
CDS 222..797
/gene="VSNL1"
/gene_synonym="HLP3"
/gene_synonym="HPCAL3"
/gene_synonym="HUVISL1"
/gene_synonym="VILIP"
/codon_start=1
/product="visinin-like 1"
/protein_id="AAH22012.1"
/db_xref="GeneID:7447"
/db_xref="HGNC:HGNC:12722"
/db_xref="MIM:600817"
/translation="MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLN
LEEFQQLYVKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLN
WAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDK
NKDDQITLDEFKEAAKSDPSIVLLLQCDIQK"
BASE COUNT 612 a 373 c 377 g 498 t
ORIGIN
1 agcggagatt tacccgagcg tgttgcggca gcggctgggc ttgcaaggcg cgatccaaga
61 gggatttaag cagcccagag ctccagagaa aaagagagcg agagagaacc acacacagag
121 acggcttaag cgtttacccg aattaaatat atatttttaa aaagaactgt tgagttttat
181 cattttcgtt aagtgaccgt gcgcagcgct gtaactgcag gatggggaag cagaatagca
241 aactggcccc tgaagtgatg gaggacctgg tgaagagcac agagtttaat gagcatgaac
301 tcaagcagtg gtacaaagga tttctcaagg actgtccaag tgggaggcta aatctcgagg
361 aatttcagca gctctatgtg aagttctttc cttatggaga cgcctccaag tttgcccagc
421 atgccttccg aaccttcgac aagaatgggg acggcaccat tgacttccga gagttcatct
481 gcgctctgtc catcacctcc aggggcagct ttgagcagaa gctgaactgg gccttcaata
541 tgtatgacct ggatggtgat ggcaagatca cccgagtgga gatgctggag atcatcgagg
601 ctatctacaa aatggtaggc actgtgatca tgatgaaaat gaatgaggat ggcctgacgc
661 ctgagcagcg agtagacaag attttcagca agatggataa gaacaaagat gaccagatta
721 cactggatga attcaaagaa gctgcaaaga gcgacccttc cattgtatta cttctgcagt
781 gcgacatcca gaaatgagct gatgtcaatg ctatggactg cacaaaagtc tcaatgttcc
841 attcagtctg cagctattca cacacacaca cacacacaca cacacacaca cacacacaca
901 cacacacaaa tattgcttgg actacctata aatggacttg cttcttgtgt ttgaaacact
961 cgtgtgcatg agaatgtcat ttgctaatga attttaaaag catatataaa acaaaacaaa
1021 caacctgcca caatgtgata tgtgtaatat catttcataa aaatccctct tcctccaaag
1081 cctgggcaga aatgtgctgc aaagagttat atgacttctt gttcatgttt tgctaatgct
1141 cgtatctcct tgattacata atgttagtag cactgagacc cccatggtaa tgtaacttaa
1201 ttataagcta tgtcactacc ctcctgtaaa atactattgg acagacacag agggaccctt
1261 ggctcctgtg tctggtccac acaccacaga agcttgtatt atcagtgaat ataaatgtac
1321 tacatttgca tgccttttgg gtttgcctta attcttacct catttgcatc ctatcgatct
1381 ggaaagagct gttttggatg aatgcagtat aaaatgtaaa aaccctgcta aatgacttat
1441 tgattaagta tatctatcta tatatacata tacacaaaga tattatttat cgaaagtaaa
1501 aaagatggaa gtgtattggt ttctgtttga attttcaaag gcttccaatg tggtggcaat
1561 aaatgtccca aataaattta taacaattga ttttccccct aattcttatt ttataatttt
1621 aaaattgcag cagttgctag caacaactta ctaaatctac tcttaaatat acaactttgg
1681 aatttgaaga attaatgaca acaaaaggga aaaaagcaac tttccaactt ttcatccagg
1741 ctcccaaaag agggacaacg aacatggcat gtgaaaagta aaacagattt gttcattccg
1801 aaaaaaaaat gttcattcta tgacaataaa ttttatctca gtggaaaaaa aaaaaaaaaa
//