LOCUS BC017180 3452 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens staphylococcal nuclease and tudor domain containing 1,
mRNA (cDNA clone MGC:790 IMAGE:3345037), complete cds.
ACCESSION BC017180
VERSION BC017180.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3452)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3452)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017180.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: f Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657430.
FEATURES Location/Qualifiers
source 1..3452
/db_xref="H-InvDB:HIT000037857"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:790 IMAGE:3345037"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3452
/gene="SND1"
/gene_synonym="p100"
/gene_synonym="TDRD11"
/db_xref="GeneID:27044"
/db_xref="HGNC:HGNC:30646"
/db_xref="MIM:602181"
CDS 183..2915
/gene="SND1"
/gene_synonym="p100"
/gene_synonym="TDRD11"
/codon_start=1
/product="staphylococcal nuclease and tudor domain
containing 1"
/protein_id="AAH17180.3"
/db_xref="GeneID:27044"
/db_xref="HGNC:HGNC:30646"
/db_xref="MIM:602181"
/translation="MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPP
PERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENK
TPQGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAK
KGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYL
VTVMLSGIKCPTFRREADGSETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGT
ILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTA
NLDQKDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRP
LYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINI
AEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS
GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARN
LPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVE
HALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASY
KPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF
VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF
AFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLV
KEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR"
BASE COUNT 829 a 927 c 954 g 742 t
ORIGIN
1 gtctctttcg ctccgtgtcc cgctgctgct cctgtgagcg cccggcgagt ccgtcccgtc
61 caccgtccgc agctggtagc cagcctgccc ctcgcctcga ctccctttca ccaacaccga
121 cacccacatt gacacctcca gtccggccag ccgctccact cgttgccttt gcatctccac
181 acatggcgtc ctccgcgcag agcggcggct cctccggggg acccgcggtc cccaccgtgc
241 agcggggcat catcaagatg gtcctctcag ggtgcgccat cattgtccga ggtcagcctc
301 gtggtgggcc tcctcctgag cggcagatca acctcagcaa cattcgtgct ggaaatcttg
361 ctcgccgggc agccgccaca caacctgatg caaaggatac ccctgatgag ccctgggcat
421 ttccagctcg agagttcctt cgaaagaagc tgattgggaa ggaagtctgt ttcacgatag
481 aaaacaagac tccccagggg cgagagtatg gcatgatcta ccttggaaaa gataccaatg
541 gggaaaacat tgcagaatca ctggttgcag agggcttagc cacccggaga gaaggcatga
601 gagctaataa tcctgagcag aaccggcttt cagaatgtga agaacaagca aaggcagcca
661 agaaagggat gtggagtgag gggaacggtt cacatactat ccgggatctc aagtatacca
721 ttgaaaaccc aaggcacttt gtggactcac accaccagaa gcctgttaat gctatcatcg
781 agcatgtgcg ggacggcagt gtggtcaggg ccctgctcct cccagattac tacctggtta
841 cagtcatgct gtcaggcatc aagtgcccaa cttttcgacg ggaagcagat ggcagtgaaa
901 ctccagagcc ttttgctgca gaagccaaat ttttcactga gtcgcgactg cttcagagag
961 atgttcagat cattctggag agctgccaca accagaacat tctgggtacc atccttcatc
1021 caaatggcaa catcacagag ctcctcctga aggaaggttt cgcacgctgt gtggactggt
1081 cgattgcagt ttacacccgg ggcgcagaaa agctgagggc ggcagagagg tttgccaaag
1141 agcgcaggct gagaatatgg agagactatg tggctcccac agctaatttg gaccaaaagg
1201 acaagcagtt tgttgccaag gtgatgcagg ttctgaatgc tgatgccatt gttgtgaagc
1261 tgaactcagg cgattacaag acgattcacc tgtccagcat ccgaccaccg aggctggagg
1321 gggagaacac ccaggataag aacaagaaac tgcgtcccct gtatgacatt ccttacatgt
1381 ttgaggcccg ggaatttctt cgaaaaaagc ttattgggaa gaaggtcaat gtgacggtgg
1441 actacattag accagccagc ccagccacag agacagtgcc tgccttttca gagcgtacct
1501 gtgccactgt caccattgga ggaataaaca ttgctgaggc tcttgtcagc aaaggtctag
1561 ccacagtgat cagataccgg caggatgatg accagagatc atcacactac gatgaactgc
1621 ttgctgcaga ggccagagct attaagaatg gcaaaggatt gcatagcaag aaggaagtgc
1681 ctatccaccg tgttgcagat atatctgggg atacccaaaa agcaaagcag ttcctgcctt
1741 ttcttcagcg ggcaggtcgt tctgaagctg tggtggaata cgtcttcagt ggttctcgtc
1801 tcaaactcta tttgccaaag gaaacttgcc ttatcacctt cttgcttgca ggcattgaat
1861 gccccagagg agcccgaaac ctcccaggct tggtgcagga aggagagccc ttcagcgagg
1921 aagctacact tttcaccaag gaactggtgc tgcagcgaga ggtggaggtg gaggtggaga
1981 gcatggacaa ggccggcaac tttatcggct ggctgcacat cgacggtgcc aacctgtccg
2041 tcctgctggt ggagcacgcg ctctccaagg tccacttcac cgccgaacgc agctcctact
2101 acaagtccct gctgtctgcc gaggaggccg caaagcagaa gaaagagaag gtctgggccc
2161 actatgagga gcagcccgtg gaggaggtga tgccagtgct ggaggagaag gagcgatctg
2221 ctagctacaa gcccgtgttt gtgaccgaga tcactgatga cctgcacttc tacgtgcagg
2281 atgtggagac cggcacccag ttggagaagc tgatggagaa catgcgcaat gacattgcca
2341 gtcacccccc tgtagagggc tcctatgccc cccgcagggg agagttctgc attgccaaat
2401 ttgtagatgg agaatggtac cgtgcccgag tagagaaagt cgagtctcct gccaaaatac
2461 atgtcttcta cattgactac ggcaacagag aggtcctgcc atccacccgc ctgggtaccc
2521 tatcacctgc cttcagcact cgggtgctgc cagctcaagc cacggagtat gccttcgcct
2581 tcatccaggt gccccaagat gatgatgccc gcacggacgc cgtggacagc gtagttcggg
2641 atatccagaa cactcagtgc ctgctcaacg tggaacacct gagtgccggc tgcccccatg
2701 tcaccctgca gtttgcagat tccaagggcg atgtggggct gggcttggtg aaggaagggc
2761 tggtcatggt ggaggtgcgc aaggagaaac agttccagaa agtgatcaca gaatacctga
2821 atgcccaaga gtcagccaag agcgccaggc tgaacctgtg gcgctatgga gactttcgag
2881 ctgatgatgc agacgaattt ggctacagcc gctaaggagg ggatcgggtt tggcccccag
2941 ccccgctcac gccagtccct cttcctctgc cgggagggtg ttttcaactc caaaccccag
3001 agaggggttg tagattgggt ccagctttgc ttcagtgtgt ggaaatgtct cgtggggtgg
3061 catcggggct gcagggtggg gaccccaagg ctttctgggg cagacccttg tcctctggga
3121 tgatgggcac tgctatccac agtctctgcc agttggtttt atttggaggt ttgtgggctt
3181 tttttaaaaa aaaaaagtcc tcaaatcagg aagaaacatc aaagactatg tcctagtgga
3241 gggagtaatc ctaacaccca ggctggccgc cagctggcac ctgcctctat cccagactgc
3301 cctcgtccca gctctctgtc caactgttga ttatgtgatt tttctgatac gtccattctc
3361 aaatgccagt gtgttcacat cttcgctctg gccagcccat tctgtattta aagcttttga
3421 ggcccaataa aatagtacgt gctgtctgca aa
//