LOCUS BC016875 1512 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens fibronectin 1, mRNA (cDNA clone IMAGE:3886582), partial cds. ACCESSION BC016875 VERSION BC016875.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1512) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1512) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC016875.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 22 Row: d Column: 24. FEATURES Location/Qualifiers source 1..1512 /db_xref="H-InvDB:HIT000089097" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3886582" /tissue_type="Lung, carcinoma, large cell undifferentiated." /clone_lib="NIH_MGC_69" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1512 /gene="FN1" /gene_synonym="CIG" /gene_synonym="FINC" /gene_synonym="FN" /gene_synonym="LETS" /db_xref="GeneID:2335" /db_xref="MIM:135600" CDS <1..808 /gene="FN1" /gene_synonym="CIG" /gene_synonym="FINC" /gene_synonym="FN" /gene_synonym="LETS" /codon_start=2 /product="FN1 protein" /protein_id="AAH16875.1" /db_xref="GeneID:2335" /db_xref="MIM:135600" /translation="TTISWAPFQDTSEYIISCHPVGTDEEPLQFRVPGTSTSATLTGL TRGATYNIIVEALKDQQRHKVREEVVTVGNSVNEGLNQPTDDSCFDPYTVSHYAVGDE WERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNGVNYKIGEKWDRQGENGQMMSCTC LGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRP GGEPSPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADREDSRE" misc_feature 263..397 /gene="FN1" /gene_synonym="CIG" /gene_synonym="FINC" /gene_synonym="FN" /gene_synonym="LETS" /note="Region: Fibronectin type 1 domain" /db_xref="CDD:smart00058" misc_feature 398..523 /gene="FN1" /gene_synonym="CIG" /gene_synonym="FINC" /gene_synonym="FN" /gene_synonym="LETS" /note="Region: Fibronectin type 1 domain" /db_xref="CDD:smart00058" misc_feature 527..646 /gene="FN1" /gene_synonym="CIG" /gene_synonym="FINC" /gene_synonym="FN" /gene_synonym="LETS" /note="Region: Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1" /db_xref="CDD:cd00061" BASE COUNT 437 a 320 c 339 g 416 t ORIGIN 1 gacaaccatc tcatgggccc cattccagga cacttctgag tacatcattt catgtcatcc 61 tgttggcact gatgaagaac ccttacagtt cagggttcct ggaacttcta ccagtgccac 121 tctgacaggc ctcaccagag gtgccaccta caacatcata gtggaggcac tgaaagacca 181 gcagaggcat aaggttcggg aagaggttgt taccgtgggc aactctgtca acgaaggctt 241 gaaccaacct acggatgact cgtgctttga cccctacaca gtttcccatt atgccgttgg 301 agatgagtgg gaacgaatgt ctgaatcagg ctttaaactg ttgtgccagt gcttaggctt 361 tggaagtggt catttcagat gtgattcatc tagatggtgc catgacaatg gtgtgaacta 421 caagattgga gagaagtggg accgtcaggg agaaaatggc cagatgatga gctgcacatg 481 tcttgggaac ggaaaaggag aattcaagtg tgaccctcat gaggcaacgt gttacgatga 541 tgggaagaca taccacgtag gagaacagtg gcagaaggaa tatctcggtg ccatttgctc 601 ctgcacatgc tttggaggcc agcggggctg gcgctgtgac aactgccgca gacctggggg 661 tgaacccagt cccgaaggca ctactggcca gtcctacaac cagtattctc agagatacca 721 tcagagaaca aacactaatg ttaattgccc aattgagtgc ttcatgcctt tagatgtaca 781 ggctgacaga gaagattccc gagagtaaat catctttcca atccagagga acaagcatgt 841 ctctctgcca agatccatct aaactggagt gatgttagca gacccagctt agagttcttc 901 tttctttctt aagccctttg ctctggagga agttctccag cttcagctca actcacagct 961 tctccaagca tcaccctggg agtttcctga gggttttctc ataaatgagg gctgcacatt 1021 gcctgttctg cttcgaagta ttcaataccg ctcagtattt taaatgaagt gattctaaga 1081 tttggtttgg gatcaatagg aaagcatatg cagccaacca agatgcaaat gttttgaaat 1141 gatatgacca aaattttaag taggaaagtc acccaaacac ttctgctttc acttaagtgt 1201 ctggcccgca atactgtagg aacaagcatg atcttgttac tgtgatattt taaatatcca 1261 cagtactcac tttttccaaa tgatcctagt aattgcctag aaatatcttt ctcttacctg 1321 ttatttatca atttttccca gtatttttat acggaaaaaa ttgtattgaa aacacttagt 1381 atgcagttga taagaggaat ttggtataat tatggtgggt gattattttt tatactgtat 1441 gtgccaaagc tttactactg tggaaagaca actgttttaa taaaagattt acattccaaa 1501 aaaaaaaaaa aa //