LOCUS BC015575 1334 bp mRNA linear HUM 11-DEC-2003 DEFINITION Homo sapiens synaptotagmin binding, cytoplasmic RNA interacting protein, mRNA (cDNA clone IMAGE:3946996), partial cds. ACCESSION BC015575 VERSION BC015575.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1334) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1334) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC015575.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 33 Row: a Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23397426. FEATURES Location/Qualifiers source 1..1334 /db_xref="H-InvDB:HIT000088739" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3946996" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>1334 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /db_xref="GeneID:10492" CDS 83..>1334 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /codon_start=1 /product="SYNCRIP protein" /protein_id="AAH15575.1" /db_xref="GeneID:10492" /translation="MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLD EIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTY RQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSV GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILY HQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMN GKDLEGENIEIVFAKPPDQKKKKKK" misc_feature 572..790 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" misc_feature 812..1000 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" misc_feature 1097..1291 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" BASE COUNT 441 a 230 c 318 g 345 t ORIGIN 1 gcagcgagca cgcgtttccc gcaacccgat accatcggac aggatttctc cgcctcagcc 61 caacggggag atctctggaa acatggctac agaacatgtt aatggaaatg gtactgaaga 121 gcccatggat actacttctg cagttatcca ttcagaaaat tttcagacat tgcttgatgc 181 tggtttacca cagaaagttg ctgaaaaact agatgaaatt tacgttgcag ggctagttgc 241 acatagtgat ttagatgaaa gagctattga agctttaaaa gaattcaatg aagacggtgc 301 attggcagtt cttcaacagt ttaaagacag tgatctctct catgttcaga acaaaagtgc 361 ctttttatgt ggagtcatga agacttacag gcagagagaa aaacaaggga ccaaagtagc 421 agattctagt aaaggaccag atgaggcaaa aattaaggca ctcttggaaa gaacaggcta 481 cacacttgat gtgaccactg gacagaggaa gtatggagga ccacctccag attccgttta 541 ttcaggtcag cagccttctg ttggcactga gatatttgtg ggaaagatcc caagagatct 601 atttgaggat gaacttgttc cattatttga gaaagctgga cctatatggg atcttcgtct 661 aatgatggat ccactcactg gtctcaatag aggttatgcg tttgtcactt tttgtacaaa 721 agaagcagct caggaggctg ttaaactgta taataatcat gaaattcgtt ctggaaaaca 781 tattggtgtc tgcatctcag ttgccaacaa taggcttttt gtgggctcta ttcctaagag 841 taaaaccaag gaacagattc ttgaagaatt tagcaaagta acagagggtc ttacagacgt 901 cattttatac caccaaccgg atgacaagaa aaaaaacaga ggcttttgct ttcttgaata 961 tgaagatcac aaaacagctg cccaggcaag gcgtaggtta atgagtggta aagtcaaggt 1021 ctgggggaat gttggaactg ttgaatgggc tgatcctata gaagatcctg atcctgaggt 1081 tatggcaaag gtaaaagtgc tgtttgtacg caaccttgcc aatactgtaa cagaagagat 1141 tttagaaaag gcatttagtc agtttgggaa actggaacga gtgaagaagt taaaagatta 1201 tgcgttcatt cattttgatg agcgagatgg tgctgtcaag gctatggaag aaatgaatgg 1261 caaagacttg gagggagaaa atattgaaat tgtttttgcc aagccaccag atcagaaaaa 1321 aaaaaaaaaa aaaa //