LOCUS BC014461 2108 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens caudal type homeobox 2, mRNA (cDNA clone MGC:23081
IMAGE:4867859), complete cds.
ACCESSION BC014461
VERSION BC014461.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2108)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2108)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24431948.
FEATURES Location/Qualifiers
source 1..2108
/db_xref="H-InvDB:HIT000036716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23081 IMAGE:4867859"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2108
/gene="CDX2"
/gene_synonym="CDX-3"
/db_xref="GeneID:1045"
/db_xref="HGNC:HGNC:1806"
/db_xref="MIM:600297"
CDS 175..1116
/gene="CDX2"
/gene_synonym="CDX-3"
/codon_start=1
/product="caudal type homeobox 2"
/protein_id="AAH14461.1"
/db_xref="GeneID:1045"
/db_xref="HGNC:HGNC:1806"
/db_xref="MIM:600297"
/translation="MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYH
VAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPA
AAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGG
QRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAE
LAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLR
SVPEPLSPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ"
BASE COUNT 455 a 659 c 618 g 376 t
ORIGIN
1 gggaccgcct cggaggcaga agagccgcga ggagccagcg gagcaccgcg ggctggggcg
61 cagccacccg ccgctcctcg agtcccctcg cccctttccc ttcgtgcccc ccggcagcct
121 ccagcgtcgg tccccaggca gcatggtgag gtctgctccc ggaccctcgc caccatgtac
181 gtgagctacc tcctggacaa ggacgtgagc atgtacccta gctccgtgcg ccactctggc
241 ggcctcaacc tggcgccgca gaacttcgtc agccccccgc agtacccgga ctacggcggt
301 taccacgtgg cggccgcagc tgcagcggca gcgaacttgg acagcgcgca gtccccgggg
361 ccatcctggc cggcagcgta tggcgcccca ctccgggagg actggaatgg ctacgcgccc
421 ggaggcgccg cggccgccgc caacgccgtg gctcacggcc tcaacggtgg ctccccggcc
481 gcagccatgg gctacagcag ccccgcagac taccatccgc accaccaccc gcatcaccac
541 ccgcaccacc cggccgccgc gccttcctgc gcttctgggc tgctgcaaac gctcaacccc
601 ggccctcctg ggcccgccgc caccgctgcc gccgagcagc tgtctcccgg cggccagcgg
661 cggaacctgt gcgagtggat gcggaagccg gcgcagcagt ccctcggcag ccaagtgaaa
721 accaggacga aagacaaata tcgagtggtg tacacggacc accagcggct ggagctggag
781 aaggagtttc actacagtcg ctacatcacc atccggagga aagccgagct agccgccacg
841 ctggggctct ctgagaggca ggttaaaatc tggtttcaga accgcagagc aaaggagagg
901 aaaatcaaca agaagaagtt gcagcagcaa cagcagcagc agccaccaca gccgcctccg
961 ccgccaccac agcctcccca gcctcagcca ggtcctctga gaagtgtccc agagcccttg
1021 agtccggtgt cttccctgca agcctcagtg tctggctctg tccctggggt tctggggcca
1081 actggggggg tgctaaaccc caccgtcacc cagtgaccca ccggggtctg cagcggcaga
1141 gcaattccag gctgagccat gaggagcgtg gactctgcta gactcctcag gagagacccc
1201 tcccctccca cccacagcca tagacctaca gacctggctc tcagaggaaa aatgggagcc
1261 aggagtaaga caagtgggat ttggggcctc aagaaatata ctctcccaga tttttacttt
1321 ttcccatctg gctttttctg ccactgagga gacagaaagc ctccgctggg cttcattccg
1381 gactggcaga agcattgcct ggactgacca caccaaccag gccttcatcc tcctccccag
1441 ctcttctctt cctagatctg caggctacac ctctggctag agccgagggg agagagggac
1501 tcaagggaaa ggcaagcttg aggccaagat ggctgctgcc tgctcatggc cctcggaggt
1561 ccagctgggc ctcctgcctc cgggcaggca aggtttacac tgcggaagcc aaaggcagct
1621 aagatagaaa gctggactga ccaaagactg cagaaccccc aggtggcctg cgtctttttt
1681 ctcttccctt cccagaccag gaaaggcttg gctggtgtat gcacagggtg tggtatgagg
1741 gggtggttat tggactccag gcctgaccag ggggcccgaa cagggacttg tttagagagc
1801 ctgtcaccag agcttctctg ggctgaatgt atgtcagtgc tataaatgcc agagccaacc
1861 tggacttcct gtcattttca caatcttggg gctgatgaag aagggggtgg ggggagtttg
1921 tgttgttgtt gctgctgttt gggttgttgg tctgtgtaac atccaagcca gagtttttaa
1981 agccttctgg atccatgggg ggagaagtga tatggtgaag ggaagtgggg agtatttgaa
2041 cacagttgaa ttttttctaa aaagaaaaag agataaatga gctttccaga aaaaaaaaaa
2101 aaaaaaaa
//