LOCUS BC013183 2055 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DO alpha,
mRNA (cDNA clone MGC:17214 IMAGE:4340975), complete cds.
ACCESSION BC013183
VERSION BC013183.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2055)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2055)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62912477.
FEATURES Location/Qualifiers
source 1..2055
/db_xref="H-InvDB:HIT000036168_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17214 IMAGE:4340975"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2055
/gene="HLA-DOA"
/gene_synonym="HLADZ"
/db_xref="GeneID:3111"
/db_xref="HGNC:HGNC:4936"
/db_xref="MIM:142930"
CDS 25..777
/gene="HLA-DOA"
/gene_synonym="HLADZ"
/codon_start=1
/product="major histocompatibility complex, class II, DO
alpha"
/protein_id="AAH13183.1"
/db_xref="GeneID:3111"
/db_xref="HGNC:HGNC:4936"
/db_xref="MIM:142930"
/translation="MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGA
SGQFTHEFDEEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVER
SNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQ
TSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMET
LVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR"
BASE COUNT 467 a 563 c 534 g 491 t
ORIGIN
1 atttgattaa agcaccagag tgtaatggcc ctcagagcag ggctggtcct ggggttccac
61 accctgatga ccctcctgag cccgcaggag gcaggggcca ccaaggctga ccacatgggc
121 tcctacggac ccgccttcta ccagtcttac ggcgcctcgg gccagttcac ccatgaattt
181 gatgaggaac agctgttctc tgtggacctg aagaaaagcg aggccgtgtg gcgtctgcct
241 gagtttggcg actttgcccg ctttgacccg cagggcgggc tggccggcat cgccgcaatc
301 aaagcccatc tggacatcct ggtggagcgc tccaaccgca gcagagccat caacgtgcct
361 ccacgggtga ccgtgctccc caaatctcgg gtggagctgg gccagcccaa catcctcatc
421 tgcatcgtgg acaacatctt cccccctgtg atcaatatca cctggctgcg caacggccaa
481 actgtcactg agggagtggc ccagaccagc ttctattccc agcctgacca tttgttccgc
541 aagttccact acctgccctt cgtgccctca gccgaggacg tctatgactg ccaggtggag
601 cactggggcc tggatgcgcc actcctcagg cattgggagc tccaggtgcc tattccacca
661 ccagatgcca tggagaccct ggtctgtgcc ctgggcctgg ccatcggcct ggtgggcttc
721 ctcgtgggca ccgtcctcat catcatgggc acatatgtgt ccagtgtccc caggtaatga
781 tccttctgag agaaatgact tgtgggagac accctgcaga tcctcatggg tttgtgacag
841 cccctgcgtg ctcagtgccc tttaagtgca tcccgctgtg ctgactttga gtgggatcaa
901 catctgtcct acgggtcccc tcttttttgg ccccagtatt catggcaggg tttgttggac
961 acctactagc ttcccttccc attcaacaca cacacacatt cttgctctac ccaaagctct
1021 ggctggcagc actaaatgct ttggtggtgt ttgcactgtg tcctttccag gccttggcca
1081 gttcttccag gggtgaggca tgtggtgctg gggattggca gccatcctgg ggcccacaca
1141 ggtgtgtctt gctccatttg gcccattgtg tgttactttg tgaatgagcc atttcacatg
1201 gacttcatga aatttgcctc ctgagttcag gtttaccctg aaagggatgc agattatcct
1261 gttcctcacg accccctcag ctaacaacag ttctgaaggg tgctgggaca ggacaggctc
1321 atggggactc cactcctgcc tgggtttact ctgtatgaag aggccactgg tatcctgcca
1381 tgatgttatc tcctttttct acttttccct agagtcccat gcatgataaa gagaggccca
1441 aggcttggat aaggtggcca cttccctcag tggagtcagt catgttaggt aggaggtggt
1501 agagtcggtc tgcgaggtat ctcgtaagag gggaggtcca cctagacaca ctctaaatat
1561 gtggcctaga agattttggt ctacttttct gtgaacagaa tttaaaacat acaaagagat
1621 aaatcaccat accacatagt ttatgtcagg accaaaatga gcaatacaga ttacggtttt
1681 caaaccagaa tgcacataag aactgcttgg gatcctttta aaagtacagg cattggcctg
1741 gtgcagtggc tcattcctgt aatcccagca ctttgggagg ccaaggggac aggactgctt
1801 gaggccaaga ggtggaaacc atcttgggct acatagagag accccatctc tacaaagaaa
1861 gatttaaaaa ttaaccagcc atggtggctc gcacctgtat tcccagccac tggggaggct
1921 gaggccggag gagtgcttga gcccaggagt tcaaggctgc agtgagccaa gattgcgcca
1981 ctgcactcca gcctaggtga cagagtgaga ccctgtctct aaataaataa ataaataaat
2041 aaaaaaaaaa aaaaa
//