LOCUS BC012978 2060 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ankyrin repeat domain 40, mRNA (cDNA clone MGC:15396
IMAGE:3834331), complete cds.
ACCESSION BC012978
VERSION BC012978.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2060)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2060)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC012978.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: n Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147469.
FEATURES Location/Qualifiers
source 1..2060
/db_xref="H-InvDB:HIT000036058"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15396 IMAGE:3834331"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2060
/gene="ANKRD40"
/gene_synonym="MGC15396"
/db_xref="GeneID:91369"
/db_xref="HGNC:HGNC:28233"
CDS 248..1354
/gene="ANKRD40"
/gene_synonym="MGC15396"
/codon_start=1
/product="ankyrin repeat domain 40"
/protein_id="AAH12978.1"
/db_xref="GeneID:91369"
/db_xref="HGNC:HGNC:28233"
/translation="MNALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNG
WTCLHWACKRNHGQVVSYLLKSGADKEILTTKGEMPVQLTSRREIRKIMGVEEEDDDD
DDDDNLPQLKKESELPFVPNYLANPAFPFIYTPTAEDSAQMQNGGPSTPPASPPADGS
PPLLPPGEPPLLGTFPRDHTSLALVQNGDVSAPSAILRTPESTKPGPVCQPPVSQSRS
LFSSVPSKPPMSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLREND
FIEIELDRQELTYQELLRVCCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELE
LVLMISENNFLFRNAASTLTERPCYNRRASKLTY"
BASE COUNT 546 a 495 c 569 g 450 t
ORIGIN
1 ccggagccgg ccttcgggag gcgcggcccg ggaggaggcc tgggcctgcg ggccgggagc
61 agcaggggcg gcccgcggga gggagcggaa gtcccgggac gggcgcgggc agcggcgcga
121 gcagggcggg cgagttccgc gctccctccc catggccggg agcgggccgc ggcgacggcg
181 gcggcgctga caggccccgg gcggggcggg gcaggcggcc tggacggggg cctggggctg
241 tgggaagatg aacgccctcc tagagcagaa ggagcagcag gagaggctgc gggaggccgc
301 ggccttaggg gacattcggg aggtgcagaa actggtggag agcggggtgg atgtgaactc
361 ccaaaatgag gtcaacggct ggacttgttt acactgggca tgtaaacgaa accatggtca
421 ggtggtctct tacctgttaa aatcaggagc tgacaaagaa attcttacca caaaaggaga
481 aatgccagtc cagttaacat caaggagaga aatcaggaag attatgggag tggaagaaga
541 agatgatgat gatgatgatg atgacaacct cccccagctg aagaaggagt cagaactgcc
601 ctttgttccc aactatttgg ccaacccagc cttccctttt atctatacac ccacagcaga
661 ggattcagcc cagatgcaga atgggggccc ctccacaccc cctgcatcac cccctgcaga
721 tggctcacct ccattgcttc cccctgggga acctcccctg ttagggacct ttccccggga
781 ccacacctct ttggcactag ttcagaatgg tgatgtgtcg gccccctctg ccatactcag
841 aacaccagaa agcacaaaac cgggtcctgt ttgtcagcca ccagtgagtc agagccgctc
901 cctgttttct tctgtcccgt ccaagccacc aatgtctctg gagcctcaaa atgggacgta
961 tgcaggacca gcgccagcat tccagccatt tttcttcact ggagcatttc catttaatat
1021 gcaagagctg gtactcaagg tgagaattca gaacccatct cttcgagaaa atgatttcat
1081 tgaaattgaa ctggaccgac aggagctcac ctaccaagag ttgctcagag tgtgttgctg
1141 tgagctgggt gttaatccag atcaagtgga gaagatcaga aagttaccca atactctgtt
1201 aaggaaggac aaggatgttg ctcgactcca agatttccag gagctggaac tggttctgat
1261 gataagtgaa aataattttc tgttcagaaa tgctgcatcc acactgactg aaaggccttg
1321 ctataacagg agagcttcaa aactgactta ctaatgcagc agggactttt atcactgagt
1381 attatgacag tgtgcatcac ctctgggcca aggacaagcc attgatctaa atgcctcaga
1441 tgcccgggag ggcctctggt gccactgcat agtatatact aacatcattc tgccaaggta
1501 ggaagcccct gacccccaag cagtggtgcc actcttccaa gcctcttggt gcacagtaaa
1561 cctattgctt gaagctttga acagctgaga agtggtctgg agaggcagaa gctgaaggtt
1621 ctatatccag tgtgttttat gtccagaatg taagagagtt gtctaagcag cagctgagag
1681 agagcggagc ctatttctag ccactcctgt tgacagtgca cctgaagggc tgggatgcgt
1741 ttttcttggt gttgcatgct cacaactctg ctgacattgg gaacttatga gagaggaaga
1801 ctcgggaaag cacagatact ggacagatgg attctggtgt ggggaaagca cagatactgg
1861 acagatggat tctagtgtga cttgtgactg tgaggtttcc tataacatat ttataaatgt
1921 tactcaggtt aaaagtattt aagaatacag ttaactaatt gtaaatatgc tgttaaccaa
1981 aagagctttc cctccctcac tttttccttt gtaaacactc atgactgcta aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa
//