LOCUS BC010454 2948 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens zinc finger, HIT type 1, mRNA (cDNA clone
IMAGE:4181647), with apparent retained intron.
ACCESSION BC010454
VERSION BC010454.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2948)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2948)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: k Column: 18
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2948
/db_xref="H-InvDB:HIT000087491"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4181647"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 677 a 702 c 903 g 666 t
ORIGIN
1 caaagtgctg agataacagg catgagccac tgcgcctggc aaggtcatgc tttttgatgc
61 tgggtagttc tttgactcct gacctggcca cttgttagct atgtgaactt tggacacatt
121 tcttaatctc tgaatgttgg taaattgggg atgatgatac tgtcccatac agctgttgta
181 agggttaaat ggttcaagtg ttgcaaagag ctgagcacgt gcctggctca tagtaagtgt
241 ccaacaagtg atagctactg gggctgctgc tgttattatt atgcttaaca ggtggttaat
301 gaataaagag atatattatg caaaattatc agaatctggc aaacagctga taaggcaatg
361 aggaaagagg ttttttgttt tttgtttttg agacagggtc tctctctgtt gcccaggctg
421 gaatgcaatg gcgcgatctc agctcgctgc aacctccacc tcccgggttc aagcgattct
481 tgtgcctcag cctcccgcgt agctgggatt acaggcatgt gccaccacac cctgctaatt
541 tttgtatttt tagtagagac atggtttcac cacgttggtc aggctggtct cgaactcctg
601 acctgaagtg atgagcccac ctcagcctcc caaagtgctg ggattgcagg ggtgagccac
661 tatgtccagc cgaggaaaga ggtttaaaat aacttctagg tttctggttt ggatgtctgc
721 atagacggtt ccatttgcgt agagagaatc tgcaggagaa gcagacttgg atgggaattt
781 tttttttttt tgagttgcag tgtccacagg gccagtgggt gatttctttt ttccttcttt
841 cttttttttt ttttttggag acagtcttgc tttgtcactc aggctggagt ggtggcgcga
901 tcacggcttg ctgcacactg cagcctcaac ctcccgggcc catgtagtcc tcccaccgca
961 gcctcccaag taactgggac tacaggcatg tgcaaccacg cctggcttat tttttaattt
1021 tttgtagaga tggggtttgg ctatgctgcc caggctggtt tctaactcct ggcatcaagc
1081 gatcctttgg cctcccaaag tgctgagatt acaggcgtgc gccaccacac ccggcctcac
1141 caggcgctgg ctgcatggcc agttctggag cccgggagca ggttctgtgt tgagggagtc
1201 actctgggag tcatttgctt gtgggtgatc atcagagccc tttgtttgga gtcaaaatcc
1261 caggaagagt gcatagactg agcagagaag agggccagcc acctccatag aggcagggag
1321 agcagccgag ctggagccgg aggattcctg gacatggaga aggcctgcag ttttgtcaag
1381 gaagcaagca aagggtctct ttctactcga tgaaggtagt cggcaccgcc acagggtgga
1441 cagggctcag gtccaaggag gaggaggaag gcacactgga gccgctctgg ggcccagagc
1501 gtgggtgggt ggtcccccag gatgaccagg caggtgtcag attttggggt tcaaggagag
1561 gatgggaggt gaaaaagtga cacatcacgt gagttgctgt gaaggagaag gagctgtgaa
1621 gccgagtaga cacatgagcg tcgccagctc tttgatggaa agtgccggtt gaggaggagg
1681 ggttgaagat gggagaggga gggaatgggc tggaggtgaa ggctcggggt cagtggtggg
1741 acttggggcg ctccagggca ggggtgtgcc cacttggcat cacgtttgtg ggtaggtggc
1801 ctggaagatg agcgtatcca agcatgggtg gcccctggtt cctttgaggt aggaggtgag
1861 atgctgagtg tgagggccat gtgtattgag ggcccaggac agcctggaag ccccagggcg
1921 ctgtgacctc cccagtcagc agtgagctgt ctccaggccg gggctcactg gctgggactg
1981 ggattgagag gaaggcggag aaaacaggca ggagaaactg aaagggtctc agctggcggg
2041 acaggaagtg tgggcccagg ggcttggccc gggaggagac aaggggacca agggcttggc
2101 aatggggatg agatcagaga gctgcagctt ccaccccggg tgccttcctc gccctgccca
2161 gagcggcggc cacactgctc tttcttggaa gccctgtaac tttgcgtgcc ctgctccatc
2221 cagttcgctc ccaggacccc gggcagcggc gggtgctgga ccgggctgcc cggcagcgtc
2281 gcatcaaccg gcagctggag gccctggaga atgacaactt ccaggatgac ccccacgcgg
2341 gactccctca gctcggcaag agactgcctc agtttgatga cgatgcggac actggaaaga
2401 aaaagaagaa aacccgaggt gatcatttta aacttcgctt ccgaaaaaac tttcaggccc
2461 tgttggagga gcagaacttg agtgtggccg agggccctaa ctacctgacg gcctgtgcgg
2521 gacccccatc gcggccccag cgccccttct gtgctgtctg tggcttccca tccccctaca
2581 cctgtgtcag ctgcggtgcc cggtactgca ctgtgcgctg tctggggacc caccaggaga
2641 ccaggtgtct gaagtggact gtgtgagcct gggcattccc agagaggaag ggccgctgtg
2701 cactgcccgg ccttcagaaa gacagaattt catcacccaa tgcaggggga gctcttcctg
2761 gaccaaggga ggagccgctc attcacccaa caaaactgtg tcttatctgc caggaaagac
2821 cagcctcact cctgggaact gtctggcagg taggctgggc cccccagtgc tgttagaata
2881 aaaagcctcg tgccggaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2941 aaaaaaaa
//