LOCUS BC010064 1944 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nicalin homolog (zebrafish), mRNA (cDNA clone
MGC:19841 IMAGE:4100399), complete cds.
ACCESSION BC010064
VERSION BC010064.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1944)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1944)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC010064.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: m Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52353964.
FEATURES Location/Qualifiers
source 1..1944
/db_xref="H-InvDB:HIT000034774"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19841 IMAGE:4100399"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1944
/gene="NCLN"
/db_xref="GeneID:56926"
/db_xref="HGNC:HGNC:26923"
/db_xref="MIM:609156"
CDS 71..1762
/gene="NCLN"
/codon_start=1
/product="nicalin homolog (zebrafish)"
/protein_id="AAH10064.2"
/db_xref="GeneID:56926"
/db_xref="HGNC:HGNC:26923"
/db_xref="MIM:609156"
/translation="MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAH
EFTVYRMQQYDLQGQPYGTRNAVLNTEARTMAAEVLSRRCVLMRLLDFSYEQYQKALR
QSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQ
AASASQGSASAAEVLLRTATANGFQMVTSGVQSKAVSDWLIASVEGRLTGLGGEDLPT
IVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASG
GGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQ
HAFLRELETVAAHQFPEVRFSMVHKRINLAEDVLAWEHERFAIRRLPAFTLSHLESHR
DGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQE
QLDSVMDWLTNQPRAAQLVDKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYD
QLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLVKAKTQ"
BASE COUNT 358 a 656 c 608 g 322 t
ORIGIN
1 gtccgcggga gccgccgccg ccgccgtccc gtcccagctg ccgccccgcg cggccccgcc
61 gccggccagg atgctggagg aagcgggcga ggtgctggag aacatgctga aggcgtcttg
121 tctgcctctc ggcttcatcg tcttcctgcc cgctgtgctg ctgctggtgg cgccgccgct
181 gcctgccgcc gacgccgcgc acgagttcac cgtgtaccgc atgcagcagt acgacctgca
241 gggccagccc tacggcacac ggaatgcagt gctgaacacg gaggcgcgca cgatggcggc
301 ggaggtgctg agccgccgct gcgtgctcat gcggctactg gacttctcct acgagcagta
361 ccagaaggcc ctgcggcagt cggcgggcgc cgtggtcatc atcctgccca gggccatggc
421 cgccgtgccc caggacgtcg tccggcaatt catggagatc gagccggaga tgctggccat
481 ggagaccgcc gtccccgtgt actttgccgt ggaggacgag gccctgctgt ctatctacaa
541 gcagacccag gctgcctccg cctcccaggg ctccgcctct gctgctgaag tactgctgcg
601 cacggccact gccaacggct tccagatggt caccagcggg gtacagagca aggccgtgag
661 tgactggctg attgccagcg tggaggggcg gctgacgggg ctgggcggag aggaccttcc
721 caccatcgtc atcgtggccc actacgacgc ctttggagtg gccccctggc tgtcgctggg
781 cgcggactcc aacgggagcg gcgtctctgt gctgctggag ctggcacgcc tcttctcccg
841 gctctacacc tacaagcgca cgcacgccgc ctacaacctc ctgttctttg cgtctggagg
901 aggcaagttt aactaccagg gaaccaagcg ctggctggaa gacaacctgg accacacaga
961 ctccagcctg cttcaggaca atgtggcctt cgtgctgtgc ctggacaccg tgggccgggg
1021 cagcagcctg cacctgcacg tgtccaagcc gcctcgggag ggcaccctgc agcacgcctt
1081 cctgcgggag ctggagacgg tggccgcgca ccagttccct gaggtacggt tctccatggt
1141 gcacaagcgg atcaacctgg cggaggacgt gctggcctgg gagcacgagc gcttcgccat
1201 ccgccgactg cccgccttca cgctgtccca cctggagagc caccgtgacg gtcagcgcag
1261 cagcatcatg gacgtgcggt cccgggtgga ttctaagacc ctgacccgta acacgaggat
1321 cattgcagag gccctgactc gagtcatcta caacctgaca gagaagggga cacccccaga
1381 catgccggtg ttcacagagc agatgcagat ccagcaggag cagctggact cggtgatgga
1441 ctggctcacc aaccagccgc gggccgcgca gctggtggac aaggacagca ccttcctcag
1501 cacgctggag caccacctga gccgctacct gaaggacgtg aagcagcacc acgtcaaggc
1561 tgacaagcgg gacccagagt ttgtcttcta cgaccagctg aagcaagtga tgaatgcgta
1621 cagagtcaag ccggccgtct ttgacctgct cctggctgtt ggcattgctg cctacctcgg
1681 catggcctac gtggctgtcc agcacttcag cctcctctac aagaccgtcc agaggctgct
1741 cgtgaaggcc aagacacagt gacacagcca cccccacagc cggagccccc gccgctccac
1801 agtccctggg gccgagcacg agtgagtgga cactgccccg ccgcgggcgg ccctgcaggg
1861 acaggggccc tctccctccc cggcggtggt tggaacactg aattacagag cttttttctg
1921 ttgctcaaaa aaaaaaaaaa aaaa
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