LOCUS BC009470 1843 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protein kinase, interferon-inducible double stranded
RNA dependent activator, mRNA (cDNA clone MGC:1978 IMAGE:3503747),
complete cds.
ACCESSION BC009470
VERSION BC009470.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1843)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1843)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32261293.
FEATURES Location/Qualifiers
source 1..1843
/db_xref="H-InvDB:HIT000034386"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1978 IMAGE:3503747"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1843
/gene="PRKRA"
/gene_synonym="HSD14"
/gene_synonym="PACT"
/gene_synonym="RAX"
/db_xref="GeneID:8575"
/db_xref="HGNC:HGNC:9438"
/db_xref="MIM:603424"
CDS 108..1049
/gene="PRKRA"
/gene_synonym="HSD14"
/gene_synonym="PACT"
/gene_synonym="RAX"
/codon_start=1
/product="protein kinase, interferon-inducible double
stranded RNA dependent activator"
/protein_id="AAH09470.1"
/db_xref="GeneID:8575"
/db_xref="HGNC:HGNC:9438"
/db_xref="MIM:603424"
/translation="MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGM
KTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKAN
ASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYT
TICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSL
RNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAEL
STSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK"
BASE COUNT 635 a 366 c 360 g 482 t
ORIGIN
1 ggaggaggtg gcggcgctgg agctcctccc ggggaccagc gacccgggga gcgagcacgt
61 cgctccgcac cgctcttcct ccagccgctg agccgtccct tctcgccatg tcccagagca
121 ggcaccgcgc cgaggccccg ccgctggagc gcgaggacag tgggaccttc agtttgggga
181 agatgataac agctaagcca gggaaaacac cgattcaggt attacacgaa tacggcatga
241 agaccaagaa catcccagtt tatgaatgtg aaagatctga tgtgcaaata cacgtgccca
301 ctttcacctt cagagtaacc gttggtgaca taacctgcac aggtgaaggt acaagtaaga
361 agctggcgaa acatagagct gcagaggctg ccataaacat tttgaaagcc aatgcaagta
421 tttgctttgc agttcctgac cccttaatgc ctgacccttc caagcaacca aagaaccagc
481 ttaatcctat tggttcatta caggaattgg ctattcatca tggctggaga cttcctgaat
541 ataccctttc ccaggaggga ggacctgctc ataagagaga atatactaca atttgcaggc
601 tagagtcatt tatggaaact ggaaaggggg catcaaaaaa gcaagccaaa aggaatgctg
661 ctgagaaatt tcttgccaaa tttagtaata tttctccaga gaaccacatt tctttaacaa
721 atgtagtagg acattcttta ggatgtactt ggcattcctt gaggaattct cctggtgaaa
781 agatcaactt actgaaaaga agcctcctta gtattccaaa tacagattac atccagctgc
841 ttagtgaaat tgccaaggaa caaggtttta atataacata tttggatata gatgaactga
901 gcgccaatgg acaatatcaa tgtcttgctg aactgtccac cagccccatc acagtctgtc
961 atggctccgg tatctcctgt ggcaatgcac aaagtgatgc agctcacaat gctttgcagt
1021 atttaaagat aatagcagaa agaaagtaaa tctggagcaa cttaaaaaat ctttcagtag
1081 cacataaaaa gttcccctct ggccccttcc caagtaaaac ttttaccgta gtgtttatgt
1141 cttgtttcta aatctcttca tagattccat caacactcca gatttaatta tctcctcata
1201 gttgttatta agctcttttt aatggcttca actttgtatc agtatactgt atttataaac
1261 tttgtaccac aagagagagt gtagcaccca ttttacagtg ccatgcacat cagagaaaga
1321 aactgcatgt ttgttgttga tgatgaaata aaaatgctag cgacagtctt tcttactggt
1381 gcttaagctc ttctttgcac aaagctttat aaagggaatt caaaggaagc cctttagaat
1441 tagagtcttg agggacagca ctaacaggcc tttattaagt atgattgatt gttaaatttc
1501 agggaacatg attggtctgc tgtgtatttg aattcatgta acaaagaact gttacgatgg
1561 gattctgctc attttattaa aaagctactg acttgactgt catcctgttc ttgttagcca
1621 ttgtgaataa gattttaatg ttgataattc tgttatttac atatctctaa tttactttga
1681 aattcaaagg tgaaaataaa aaatgatggc ctaagtaaaa tttaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaccccc ggg
//