LOCUS BC008743 2289 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zyxin, mRNA (cDNA clone MGC:3071 IMAGE:3345843),
complete cds.
ACCESSION BC008743
VERSION BC008743.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2289)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2289)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008743.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: e Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2289
/db_xref="H-InvDB:HIT000033938"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3071 IMAGE:3345843"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2289
/gene="ZYX"
/gene_synonym="ESP-2"
/gene_synonym="HED-2"
/db_xref="GeneID:7791"
/db_xref="HGNC:HGNC:13200"
/db_xref="MIM:602002"
CDS 123..1841
/gene="ZYX"
/gene_synonym="ESP-2"
/gene_synonym="HED-2"
/codon_start=1
/product="zyxin"
/protein_id="AAH08743.1"
/db_xref="GeneID:7791"
/db_xref="HGNC:HGNC:13200"
/db_xref="MIM:602002"
/translation="MAAPRPSPAISVSVSAPAFYAPQKKFGPVVAPKPKVNPFRPGDS
EPPPAPGAQRAQMGRVGEIPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPIEE
SFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQPREKVSSIDLEIDSLSSLLDDMTK
NDPFKARVSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQS
QTQFHVQPQPQPKPQVQLHVQSQTQPVSLANTQPRGPPASSPAPAPKFSPVTPKFTPV
ASKFSPGAPGGSGSQPNQKLGHPEALSAGTGSPQPPSFTYAQQREKPRVQEKQHPVPP
PAQNQNQVRSPGAPGPLTLKEVEELEQLTQQLMQDMEHPQRQNVAVNELCGRCHQPLA
RAQPAVRALGQLFHIACFTCHQCAQQLQGQQFYSLEGAPYCEGCYTDTLEKCNTCGEP
ITDRMLRATGKAYHPHCFTCVVCARPLEGTSFIVDQANRPHCVPDYHKQYAPRCSVCS
EPIMPEPGRDETVRVVALDKNFHMKCYKCEDCGKPLSIEADDNGCFPLDGHVLCRKCH
TARAQT"
BASE COUNT 432 a 838 c 615 g 404 t
ORIGIN
1 gtgtccctcc ccgcccggct ggaggctgct ccggaccggg acgcagagtc tgcggacccg
61 gcgccgaggc ggccacccga gacgcggcgc gcacgctccg gcctgcgcag cccggcccgg
121 ccatggcggc cccccgcccg tctcccgcga tctccgtttc ggtctcggct ccggcttttt
181 acgccccgca gaagaagttc ggccctgtgg tggccccaaa gcccaaagtg aatcccttcc
241 ggcccgggga cagcgagcct cccccggcac ccggggccca gcgcgcacag atgggccggg
301 tgggcgagat tcccccgccg cccccggaag actttcccct gcctccacct ccccttgctg
361 gggatggcga cgatgcagag ggtgctctgg gaggtgcctt cccgccgccc cctcccccga
421 tcgaggaatc atttccccct gcgcctctgg aggaggagat cttcccttcc ccgccgcctc
481 ctccggagga ggagggaggg cctgaggccc ccataccgcc cccaccacag cccagggaga
541 aggtgagcag tattgatttg gagatcgact ctctgtcctc actgctggat gacatgacca
601 agaatgatcc tttcaaagcc cgggtgtcat ctggatatgt gcccccacca gtggccactc
661 cattcagttc caagtccagt accaagcctg cagccggggg cacagcaccc ctgcctcctt
721 ggaagtcccc ttccagctcc cagcctctgc cccaggttcc ggctccggct cagagccaga
781 cacagttcca tgttcagccc cagccccagc ccaagcctca ggtccaactc catgtccagt
841 cccagaccca gcctgtgtct ttggctaaca cccagccccg agggccccca gcctcatctc
901 cggctccagc ccctaagttt tctccagtga ctcctaagtt tactcctgtg gcttccaagt
961 tcagtcctgg agccccaggt ggatctgggt cacaaccaaa tcaaaaattg gggcaccccg
1021 aagctctttc tgctggcaca ggctcccctc aacctcccag cttcacctat gcccagcaga
1081 gggagaagcc ccgagtgcag gagaagcagc accccgtgcc cccaccggct cagaaccaaa
1141 accaggtgcg ctcccctggg gccccagggc ccctgactct gaaggaggtg gaggagctgg
1201 agcagctgac ccagcagcta atgcaggaca tggagcatcc tcagaggcag aatgtggctg
1261 tcaacgaact ctgcggccga tgccatcaac ccctggcccg ggcgcagcca gccgtccgcg
1321 ctctagggca gctgttccac atcgcctgct tcacctgcca ccagtgtgcg cagcagctcc
1381 agggccagca gttctacagt ctggaggggg cgccgtactg cgagggctgt tacactgaca
1441 ccctggagaa gtgtaacacc tgcggggagc ccatcactga ccgcatgctg agggccacgg
1501 gcaaggccta tcacccgcac tgcttcacct gtgtggtctg cgcccgcccc ctggagggca
1561 cctccttcat cgtggaccag gccaaccggc cccactgtgt ccccgactac cacaagcagt
1621 acgccccgag gtgctccgtc tgctctgagc ccatcatgcc tgagcctggc cgagatgaga
1681 ctgtgcgagt ggtcgccctg gacaagaact tccacatgaa gtgttacaag tgtgaggact
1741 gcgggaagcc cctgtcgatt gaggcagatg acaatggctg cttccccctg gacggtcacg
1801 tgctctgtcg gaagtgccac actgctagag cccagacctg agtgaggaca ggccctcttc
1861 agaccgcagt ccatgcccca ttgtggacca cccacactga gaccacctgc ccccacctca
1921 gttattgttt tgatgtctag cccctcccat ttccaacccc tccctagcat cccaggtgcc
1981 ctgacccagg acccaacatg gtctagggat gcaggatccc cgccctgggg tctggtcctc
2041 gcccatcctg cagggattgc ccaccgtctt ccagacaccc cacctgaggg gggcaccagg
2101 tttagtgctg ctgctttcac tgctgcaccc gcgccctcgg ccggcccccc gagcagcctt
2161 tgtactctgc ttgcggaggg ctgggagacc ctccaggaca ttcccaccct cccccatgct
2221 gccaagttgt agctatagct acaaataaaa aaaaaccttg ttttccagaa aaaaaaaaaa
2281 aaaaaaaaa
//