LOCUS BC008741 3211 bp mRNA linear HUM 18-JAN-2005
DEFINITION Homo sapiens PDZ and LIM domain 5, mRNA (cDNA clone MGC:2010
IMAGE:3345715), complete cds.
ACCESSION BC008741
VERSION BC008741.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3211)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3211)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008741.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5453713.
FEATURES Location/Qualifiers
source 1..3211
/db_xref="H-InvDB:HIT000033936"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2010 IMAGE:3345715"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3211
/gene="PDLIM5"
/gene_synonym="1110001A05Rik"
/gene_synonym="ENH"
/gene_synonym="L9"
/gene_synonym="LIM"
/gene_synonym="PRO2489"
/db_xref="GeneID:10611"
/db_xref="MIM:605904"
CDS 121..1911
/gene="PDLIM5"
/gene_synonym="1110001A05Rik"
/gene_synonym="ENH"
/gene_synonym="L9"
/gene_synonym="LIM"
/gene_synonym="PRO2489"
/codon_start=1
/product="PDLIM5 protein"
/protein_id="AAH08741.1"
/db_xref="GeneID:10611"
/db_xref="MIM:605904"
/translation="MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANV
RIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRASAAPKPEPVPVQKGEPKE
VVKPVPITSPAVSKVTSTNNMAYNKAPRPFGSVSSPKVTSIPSPSSAFTPAHATTSSH
ASPSPVAAVTPPLFAASGLHANANLSADQSPSALSAGKTAVNVPRQPTVTSVCSETSQ
ELAEGQRRGSQGDSKQQNGPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTG
TTQSRSFRILAQITGTEHLKESEADNTKKANNSQEPSPQLASSVASTRSMPESLDSPT
SGRPGVTSLTTAAAFKPVGSTGVIKSPSWQRPNQGVPSTGRISNSAAYSGSVAPANSA
LGQTQPSDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCK
NTMAYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVAC
GKPIRNNVFHLEDGEPYCETDYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVC
SVCCESLEGQTFFSKKDKPLCKKHAHSVNF"
BASE COUNT 944 a 720 c 709 g 838 t
ORIGIN
1 gggacggcgc cctcaccgcg agtcacttgt cagcccttgt ctgaggcgga ggcagccccg
61 cgccgcgccg gacccgagca tatttcattt tctgtcattg gactttgagc cattagaacc
121 atgagcaact acagtgtgtc actggttggc ccagctcctt ggggtttccg gctgcagggc
181 ggtaaggatt tcaacatgcc tctgacaatc tctagtctaa aagatggcgg caaggcagcc
241 caggcaaatg taagaatagg cgatgtggtt ctcagcattg atggaataaa tgcacaagga
301 atgactcatc ttgaagccca gaataagatt aagggttgta caggctcttt gaatatgact
361 ctgcaaagag catctgctgc acccaagcct gagccggttc ctgttcaaaa gggagaacct
421 aaagaagtag ttaaacctgt gcccattaca tctcctgctg tgtccaaagt cacttccaca
481 aacaacatgg cctacaataa ggcaccacgg ccttttggtt ctgtgtcttc accaaaagtc
541 acatccatcc catcaccatc gtctgccttc accccagccc atgcgaccac ctcatcacat
601 gcttcccctt cacccgtggc tgccgtcact cctcccctgt tcgctgcatc tggactgcat
661 gctaatgcca atcttagtgc tgaccagtct ccatctgcac tgagcgctgg taaaactgca
721 gttaatgtcc cacggcagcc cacagtcacc agcgtgtgtt ccgagacttc tcaggagcta
781 gcagagggac agagaagagg atcccagggt gacagtaaac agcaaaatgg cccaccaaga
841 aaacacattg tggagcgcta tacagagttt tatcatgtac ccactcacag tgatgccagc
901 aagaagagac tgattgagga tactgaagac tggcgtccaa ggactggaac aactcagtct
961 cgctctttcc gaatccttgc ccagatcact gggactgaac atttgaaaga atctgaagcc
1021 gataatacaa agaaggcaaa taactctcag gagccttctc cgcagttggc ttcctcggta
1081 gcttccacac ggagcatgcc cgagagcctg gacagcccaa cctctggcag accaggggtt
1141 accagcctca caactgcagc tgccttcaag cctgtaggat ccactggcgt catcaagtca
1201 ccaagctggc aacggccaaa ccaaggagta ccttccactg gaagaatctc aaacagcgct
1261 gcttactcag gatcagtggc accagccaac tcagctttgg gacaaaccca gccaagtgac
1321 caggacactt tagtgcaaag agctgagcac attccagcag ggaaacgaac tccgatgtgc
1381 gcccattgta accaggtcat cagaggacca ttcttagtgg cactggggaa atcttggcac
1441 ccagaagaat tcaactgcgc tcactgcaaa aatacaatgg cctacattgg atttgtagag
1501 gagaaaggag ccctgtattg tgagctgtgc tatgagaaat tctttgcccc tgaatgtggt
1561 cgatgccaaa ggaagatcct tggagaagtc atcaatgcgt tgaaacaaac ttggcatgtt
1621 tcctgttttg tgtgtgtagc ctgtggaaag cccattcgga acaatgtttt tcacttggag
1681 gatggtgaac cctactgtga gactgattat tatgccctct ttggtactat atgccatgga
1741 tgtgaatttc ccatagaagc tggtgacatg ttcctggaag ctctgggcta cacctggcat
1801 gacacttgct ttgtatgctc agtgtgttgt gaaagtttgg aaggtcagac ctttttctcc
1861 aagaaggaca agcccctgtg taagaaacat gctcattctg tgaatttttg aaagtcaaca
1921 gttcaggaga agagaaggaa tttgaagaga aaaaggaaaa ttaaaattac taattaattt
1981 ttagattcaa tatttatatg gagttttgaa aaataatagt ggccctgaag gaataaattc
2041 cagctttaaa aaccaagtct gaggaaatat ttggcttcat aaagtaaaga gacggtttgg
2101 catttattat tactttttcc tgtattttat gcccataaaa taagctttat aaaaaccaat
2161 ttcctgatgg actattaaat tcatcttaga ataaattagt gaagaattta attttagaat
2221 aaataatcca atctgaaata attatacctt ctttccttgt taggtagtta tgagtaaatc
2281 tgcaaaaggc aatgaaaatg ccttaaattt tatcaataac agaattattg tatttaaaaa
2341 aaaactaata cttatcttta aaatagtaaa taggatttta aacagagaat tttatcagta
2401 ataggtgtca gtttttaaaa aattgcttgt aggctgagcg cggtggctca cgcctgtaat
2461 cccagctact caagaggctg aggcacgaga atcacttgaa cccgggaggg agaggttgca
2521 gtgagccaag atcgtaccac tgcactccag cctgggtgac agagtgagac tctgtctcca
2581 aaaaaaaact ttgcttgtat attatttttg ccttacagtg gatcattcta gtaggaaagg
2641 acaataagat tttttatcaa aatgtgtcat gccagtaaga gatgttatat tcttttctca
2701 tttcttcccc acccaaaaat aagctaccat atagcttata agtctcaaat ttttgccttt
2761 tactaaaatg tgattgtttc tattcattgt gtatgcttca tcacctatat taggcaaatt
2821 ccattttttt cccttgtgct aaggtaaaga tttaattaaa taattttggc ctctcatagt
2881 tttctctctc tttaaagaga ataaatagag ggccaggtgt ggtggctcac gcctgtgatc
2941 ccagcacttt gggaggccaa gacgggcgga tcatgaggtc aagagatcaa gatcatcctg
3001 gccaacatgg tgaaaccctg tctctactaa aaatacaaaa atgagctggg catggtgggg
3061 cgtgcctgta gtcccatgta cttgggaggc tgaggcagga aaattcttga acccaggaga
3121 cggaagttgc agtgagctga gatcacacca ctgcactcca gcctggtgac agagcaagac
3181 tccggctctt aaaaaaaaaa aaaaaaaaaa a
//