LOCUS BC008100 1477 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinal outer segment membrane protein 1, mRNA (cDNA
clone MGC:17106 IMAGE:4177529), complete cds.
ACCESSION BC008100
VERSION BC008100.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1477)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1477)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19743809.
FEATURES Location/Qualifiers
source 1..1477
/db_xref="H-InvDB:HIT000033649"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17106 IMAGE:4177529"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1477
/gene="ROM1"
/gene_synonym="ROM"
/gene_synonym="ROSP1"
/gene_synonym="TSPAN23"
/db_xref="GeneID:6094"
/db_xref="HGNC:HGNC:10254"
/db_xref="MIM:180721"
CDS 132..1187
/gene="ROM1"
/gene_synonym="ROM"
/gene_synonym="ROSP1"
/gene_synonym="TSPAN23"
/codon_start=1
/product="retinal outer segment membrane protein 1"
/protein_id="AAH08100.1"
/db_xref="GeneID:6094"
/db_xref="HGNC:HGNC:10254"
/db_xref="MIM:180721"
/translation="MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLV
QLRHLGTFLAPSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGP
LLVAGTAGGGGLLVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVD
ELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCN
PHSPRPCLQNRLSDSYAHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTF
LLQALVLLGLRYLQTALEGLGGVIDAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAP
EEAPPGEAPPKEDLSEA"
BASE COUNT 295 a 413 c 481 g 288 t
ORIGIN
1 gggaggatgc tcagggtatt ggggtcaggg tggcattagc ccagctcaag ccgggccggg
61 ctgactcagc atcctgcccc agccagcttc catccctgac acctctgcac tcccttgggc
121 agagatggga gatggcgccg gtgttgcccc tggtgctgcc cctgcagccc cgcatccgcc
181 tggcacaagg gctctggctc ctctcctggc tgctggcgct ggctggtggc gtcatcctcc
241 tctgtagtgg gcacctcctg gtccagctaa ggcaccttgg caccttcctg gctccctcct
301 gtcagttccc tgtcctgccc caggctgccc tggcagcggg cgcggtggct ctgggcacag
361 gactagtggg tgtaggagcc agccgggcaa gtctgaatgc agctctatac cctccctggc
421 gaggggtcct gggcccgctg ctggtggctg gcacggctgg tggggggggg ctcctggtcg
481 tcgccctcgg gctagccctg gctttgcctg ggagtctgga tgaggcgctg gaggagggcc
541 tggtgactgc cttggctcac tacaaggaca cagaggtgcc tgggcactgt caggccaaaa
601 ggctggtgga tgagctgcaa ctgaggtacc actgctgcgg gcgccacggg tacaaggatt
661 ggtttggggt ccagtgggtc agcagccgtt acctggatcc cggtgaccgg gatgtggctg
721 accggatcca gagcaatgta gaaggcctat acctgactga tggggtccct ttctcctgtt
781 gcaaccccca ctcaccccgc ccttgcttgc aaaaccgtct ttcagactcc tacgcccacc
841 ccctgttcga tccccgacaa cccaaccaaa acctctgggc ccaagggtgc catgaggtgc
901 tgctggagca cttgcaggac ttggcaggca cactgggtag catgctggct gtcaccttcc
961 tactgcaggc tctggtgctc cttggcctgc ggtacctgca aacagcactg gaggggcttg
1021 gaggggtcat tgatgcggga ggagagaccc agggctatct ctttcccagt gggctgaaag
1081 atatgctgaa aacagcatgg ctacagggag gggttgcctg caggccagca cctgaggagg
1141 ccccaccagg agaagcacct cccaaggagg atctatctga ggcctagagg cctggagctt
1201 ggggtgagga agagggaggg atggacaagt ctgaaaacct cacaactcct taccaaggct
1261 ccaggttggg gggatcgtag gattagaggg gctaaggata gtcagcgagc tggactgggg
1321 taagaaagaa aaccagatgt cctagggcct agcccttgta gtcagaacca ccagggaaca
1381 gcaaagaaca gagtgatggg aaagtgacat gagaaggcct ggaggctgat tctgatatag
1441 actcaataaa gtttttggat ggaaaaaaaa aaaaaaa
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