LOCUS BC007785 1452 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens sorting nexin 8, mRNA (cDNA clone IMAGE:2819608),
partial cds.
ACCESSION BC007785
VERSION BC007785.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1452)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1452)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007785.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: a Column: 1.
FEATURES Location/Qualifiers
source 1..1452
/db_xref="H-InvDB:HIT000086914"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2819608"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1452
/gene="SNX8"
/db_xref="GeneID:29886"
CDS <1..1381
/gene="SNX8"
/codon_start=2
/product="SNX8 protein"
/protein_id="AAH07785.2"
/db_xref="GeneID:29886"
/translation="DPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAIVQQVPA
PSRMQMPQGNPLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYR
RYNDFVVFQEMLLHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVARHPLFS
EDVVLKLFLSFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQFAISREL
IRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAALNSSTWG
SLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLH
KHQRALHKYSLMKRQMMSATAQNREPESVEQLESRIVEQENAIQTMELRNYFSLYCLH
QETQLIHVYLPLTSHILRAFVNSQIQGHKEMSKVWNDLRPKLSCLFAGPHSTLTPPCS
PPEDGLCPH"
misc_feature 206..517
/gene="SNX8"
/note="PX; Region: PX domain. PX domains bind to
phosphoinositides"
/db_xref="CDD:pfam00787"
BASE COUNT 322 a 447 c 432 g 251 t
ORIGIN
1 ggacccgctg cccgcggctg cagtcggggc ggcagctgag gcggaggctg acgaggaggc
61 ggatcccccg gcgtcagatc tgccgacacc ccaggccatc gagccccagg ccatcgtgca
121 gcaggtccca gcccccagtc gaatgcagat gccgcagggg aacccgctgc tgctgtccca
181 caccctgcag gagctgctgg ccagggacac cgtgcaggtg gagctcattc cggagaagaa
241 gggcctcttc ctgaagcatg tggagtatga ggtttccagc cagcgcttca agtcctcggt
301 atacagacgg tacaatgact tcgtggtctt ccaggagatg ctcctgcaca agttccccta
361 ccgtatggtg cctgccctgc cacccaagag aatgctggga gctgacaggg agttcatcga
421 ggccaggagg agagccctga agcgcttcgt caacctggtg gcgcgacacc ccctgttctc
481 cgaggatgtg gtcctcaagc tcttcctgtc cttcagcggc tcggatgtgc agaacaagtt
541 aaaggagtca gcacagtgcg tcggggacga attcctgaac tgtaagctgg ctaccagggc
601 caaggacttc ctcccagctg acatccaggc tcagtttgcc atcagccggg agctgatccg
661 gaacatctac aatagctttc acaagcttcg cgacagggcc gagcggatcg cgtcgcgggc
721 catcgacaat gcggcagatc ttctcatatt cgggaaggag ctaagtgcaa tagggtctga
781 cacgaccccg ctgccctcct gggccgctct gaatagcagc acgtgggggt ccctgaagca
841 ggctctgaaa ggcctgtctg tggaattcgc gctgctcgcc gacaaggctg cacaacaggg
901 taagcaggaa gagaacgacg tggtggagaa gctgaacctc ttcttggatc tgctgcagtc
961 ctataaggac ctgtgcgagc ggcatgagaa gggcgtgttg cacaagcacc agcgggccct
1021 gcacaagtac agcctgatga agaggcagat gatgagcgcc accgcgcaga accgcgagcc
1081 ggagtccgtg gagcagctgg agtcccgcat cgtggagcag gagaacgcga ttcagacgat
1141 ggagctgcgg aactacttct ccctgtactg cctgcaccag gagacgcagc tcatccacgt
1201 ctacctgccc ctcacctccc acatcctccg cgccttcgtc aactctcaga tccaagggca
1261 caaggagatg agcaaggtgt ggaacgacct gaggcccaag ctcagctgcc tctttgcggg
1321 accacacagc accctgaccc caccgtgctc cccgccggag gacggcctgt gtcctcacta
1381 gcgcctgagg ctgaggtggt gctccctgcg gccgcactaa aacctctttc caaaaaaaaa
1441 aaaaaaaaaa aa
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