LOCUS BC002965 2678 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens lysosomal-associated membrane protein 2, mRNA (cDNA
clone MGC:1710 IMAGE:3543019), complete cds.
ACCESSION BC002965
VERSION BC002965.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2678)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2678)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504956.
FEATURES Location/Qualifiers
source 1..2678
/db_xref="H-InvDB:HIT000031322"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1710 IMAGE:3543019"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2678
/gene="LAMP2"
/gene_synonym="CD107b"
/gene_synonym="LAMPB"
/db_xref="GeneID:3920"
/db_xref="MIM:309060"
CDS 136..1368
/gene="LAMP2"
/gene_synonym="CD107b"
/gene_synonym="LAMPB"
/codon_start=1
/product="LAMP2 protein"
/protein_id="AAH02965.1"
/db_xref="GeneID:3920"
/db_xref="MIM:309060"
/translation="MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYA
KWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANF
TKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLE
KNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKP
EAGTYSVNNGNDTCLLATMGLQLNITQDKVASVININPNTTHSTGSCRSHTALLRLNS
STIKYLDFVFAVKNENRFYLKEVNISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKE
QTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQECSLDDDTILIPIIVGAGLSGLIIVI
VIAYVIGRRKSYAGYQTL"
misc_feature 265..1365
/gene="LAMP2"
/gene_synonym="CD107b"
/gene_synonym="LAMPB"
/note="Lamp; Region: Lysosome-associated membrane
glycoprotein (Lamp)"
/db_xref="CDD:pfam01299"
BASE COUNT 758 a 528 c 559 g 833 t
ORIGIN
1 gattcctggc ttttgcaagg ctgtggtcgg tggtcatcag tgctcttgac ccaggtccag
61 cgagcctttt ccctggtgtt gcagctgttg ttgtaccgcc gccgtcgccg ccgtcgccgc
121 ctgctctgcg gggtcatggt gtgcttccgc ctcttcccgg ttccgggctc agggctcgtt
181 ctggtctgcc tagtcctggg agctgtgcgg tcttatgcat tggaacttaa tttgacagat
241 tcagaaaatg ccacttgcct ttatgcaaaa tggcagatga atttcacagt tcgctatgaa
301 actacaaata aaacttataa aactgtaacc atttcagacc atggcactgt gacatataat
361 ggaagcattt gtggggatga tcagaatggt cccaaaatag cagtgcagtt cggacctggc
421 ttttcctgga ttgcgaattt taccaaggca gcatctactt attcaattga cagcgtctca
481 ttttcctaca acactggtga taacacaaca tttcctgatg ctgaagataa aggaattctt
541 actgttgatg aacttttggc catcagaatt ccattgaatg acctttttag atgcaatagt
601 ttatcaactt tggaaaagaa tgatgttgtc caacactact gggatgttct tgtacaagct
661 tttgtccaaa atggcacagt gagcacaaat gagttcctgt gtgataaaga caaaacttca
721 acagtggcac ccaccataca caccactgtg ccatctccta ctacaacacc tactccaaag
781 gaaaaaccag aagctggaac ctattcagtt aataatggca atgatacttg tctgctggct
841 accatggggc tgcagctgaa catcactcag gataaggttg cttcagttat taacatcaac
901 cccaatacaa ctcactccac aggcagctgc cgttctcaca ctgctctact tagactcaat
961 agcagcacca ttaagtatct agactttgtc tttgctgtga aaaatgaaaa ccgattttat
1021 ctgaaggaag tgaacatcag catgtatttg gttaatggct ccgttttcag cattgcaaat
1081 aacaatctca gctactggga tgcccccctg ggaagttctt atatgtgcaa caaagagcag
1141 actgtttcag tgtctggagc atttcagata aatacctttg atctaagggt tcagcctttc
1201 aatgtgacac aaggaaagta ttctacagcc caagagtgtt cgctggatga tgacaccatt
1261 ctaatcccaa ttatagttgg tgctggtctt tcaggcttga ttatcgttat agtgattgct
1321 tacgtaattg gcagaagaaa aagttatgct ggatatcaga ctctgtaaca ctaatcaata
1381 cgtgatctct gttacaaaag aaaaaagcaa gtacaagttc caacatgcaa tactggtcaa
1441 cttaaggtat atttagttgc agtccagctc tttagaatgg gtggtatggg ggatttcaaa
1501 cttaaacaaa aaactatcaa ctacaaatta gttgcctgac tttggttttt ccaaccaagg
1561 aatttaaaac tgttattttt acagcaaaag atgtgcaaaa tcactggatt ataagttcta
1621 ttttactgtc ttgaattagt atttcagtgt tttcatttta gacattcaga ctaaaaatac
1681 accgtttaga aaaaacaatt tttgaaaaag agattttttt tccctgcagg tagttgagtt
1741 ggaacaacat gttctaccgt ggatttgtac ttgctccttt tgctcttttt ttttgtgtgt
1801 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgatttt tgtttgcagg ttaacttagc
1861 tactttggca ttgctgcata tttgaccttt gagagatata atagtagatt tgaacagggg
1921 ctggtattat tatgttctta gcaataaatg cttttctaat gccttttgaa tacatttgta
1981 tttatgtggc tgtaatgaca aaagatacaa aagcttttta aaatttagag taggtattaa
2041 tcttattgtt taatcttttt tttaaaaaaa ctggatattt caatctttta aattgcaata
2101 tataagacta ttccaactgg gcatttcaat ccatttttta ggtgctttag agataattgc
2161 ttgccagtgc caattgaggg cattagtact ttgtgctcat aaattggcct ctgtatgcag
2221 tactaaaatt aatgcagatt tctctttagc cttccaacat ttcttgttga tagtgatgta
2281 ttttattatt ttctttttct taagaaatgc cagtgtgtcc tagaacctag ataacgaagt
2341 gcacttacac ttataaaata acttgcatct aggctgggcg tggcggctca cgcctgtaat
2401 cccagcactt tgggaggccg aagtgggtgg atcacttgag gccaggagtt tgagaccagc
2461 ctggccaaca tggtgaaacc ccatctctat cagaaataca aaaaattagc tgggcgtggt
2521 ggtgggcgcc tgtaatccca gttactcggg aggctgaggc aggagaatca cttgaacccg
2581 ggaggcagag gttgcggtga gccaagagcg caccattgca ctccagcctg ggcgacaaaa
2641 acgaaactcc atctcaaaac aaaaaaaaaa aaaaaaaa
//