LOCUS BC002945 1854 bp mRNA linear HUM 02-MAR-2004 DEFINITION Homo sapiens chromosome 9 open reading frame 86, mRNA (cDNA clone MGC:10629 IMAGE:3954912), complete cds. ACCESSION BC002945 VERSION BC002945.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1854) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1854) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002945.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 15 Row: o Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13435142. FEATURES Location/Qualifiers source 1..1854 /db_xref="H-InvDB:HIT000031305" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:10629 IMAGE:3954912" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1854 /gene="C9orf86" /gene_synonym="bA216L13.9" /gene_synonym="FLJ10101" /gene_synonym="FLJ13045" /gene_synonym="pp8875" /db_xref="GeneID:55684" CDS 168..1601 /gene="C9orf86" /gene_synonym="bA216L13.9" /gene_synonym="FLJ10101" /gene_synonym="FLJ13045" /gene_synonym="pp8875" /codon_start=1 /product="C9orf86 protein" /protein_id="AAH02945.2" /db_xref="GeneID:55684" /translation="MKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQVTSIHWSY KTTDDIVKVEVWDVVDKGKCKKRGDGLKMENDPQEAESEMALDAEFLDVYKNCNGVVM MFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPG SSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDMDATLEELSVQQ ETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPGTPQP APQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRPPPWGWRLRGALGRRGQ WPPWGGGRACHCLGRHLPLYHRLCRCPVAAVCASELEEAGHWWSPGWALQVLGLQAQC EPALQEGRGQLASARLGGHPGPLGAEPPVFLRDVTEAQEGPVRVCLQRLGRGRLAVGC ALPRHLLALRAHLGPQHAYGSASGREP" misc_feature 171..701 /gene="C9orf86" /gene_synonym="bA216L13.9" /gene_synonym="FLJ10101" /gene_synonym="FLJ13045" /gene_synonym="pp8875" /note="Ras; Region: Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. The high cutoff is so high to avoid overlaps with related families" /db_xref="CDD:pfam00071" BASE COUNT 380 a 575 c 588 g 311 t ORIGIN 1 cgccggccgc gcccgggctg ggacgtccga gcgggaagat gttttccgcc ctgaagaagc 61 tggtggggtc ggaccaggcc ccgggccggg acaagaacat ccccgccggg ctgcagtcca 121 tgaaccaggc gttgcagagg cgcttcgcca agggggtgca gtacaacatg aagatagtga 181 tccggggaga caggaacacg ggcaagacag cgctgtggca ccgcctgcag ggccggccgt 241 tcgtggagga gtacatcccc acacaggaga tccaggtcac cagcatccac tggagctaca 301 agaccacgga tgacatcgtg aaggttgaag tctgggatgt agtagacaaa ggaaaatgca 361 aaaagcgagg cgacggctta aagatggaga acgaccccca ggaggcggag tctgaaatgg 421 ccctggatgc tgagttcctg gacgtgtaca agaactgcaa cggggtggtc atgatgttcg 481 acattaccaa gcagtggacc ttcaattaca ttctccggga gcttccaaaa gtgcccaccc 541 acgtgccagt gtgcgtgctg ggaaactacc gggacatggg cgagcaccga gtcatcctgc 601 cggacgacgt gcgtgacttc atcgacaacc tggacagacc tccaggttcc tcctacttcc 661 gctatgctga gtcttccatg aagaacagct tcggcctaaa gtaccttcat aagttcttca 721 atatcccatt tttgcagctt cagagggaga cgctgttgcg gcagctggag acgaaccagc 781 tggacatgga cgccacgctg gaggagctgt cggtgcagca ggagacggag gaccagaact 841 acggcatctt cctggagatg atggaggctc gcagccgtgg ccatgcgtcc ccactggcgg 901 ccaacgggca gagcccatcc ccgggctccc agtcaccagt ggtgcctgca ggcgctgtgt 961 ccacggggag ctccagcccc ggcacacccc agcccgcccc acagctgccc ctcaatgccg 1021 ccccaccatc ctctgtgccc cctgtaccac cctcagaggc cctgccccca cctgcgtgcc 1081 cctcagcccc cgccccacgg cgcagcatca tctctaggcc gccaccctgg gggtggcgac 1141 tacgaggagc tctaggccgg cgtgggcagt ggccgccctg gggcgggggg cgtgcctgtc 1201 actgcctggg gaggcatttg cctctgtacc atcgcctttg ccgctgcccc gtggctgccg 1261 tgtgcgcttc tgagctggaa gaggccgggc attggtggtc cccaggctgg gccctgcagg 1321 tgctgggcct tcaggcccag tgtgagcctg ctctgcaaga agggagggga cagctggctt 1381 cagccaggct cggtggacac cctggccctc tcggggcaga gccgccagtg tttctcaggg 1441 atgtgactga ggcccaggag ggacctgtga gggtctgttt acagaggctg ggcaggggcc 1501 gcttggctgt ggggtgtgcg ctgccccggc acctgcttgc cctccgcgct catctggggc 1561 cgcagcatgc ctatggttcc gcttccggcc gggagccctg aacacgggtg tgcagactca 1621 ccctaaaggg cggcccaggc cccacgctag aaggctggcg agaccgaagg cagcatgtga 1681 ggcctctcct gggagtgggg gttgtgtttc ccacagtggc ctcagctgcg cccccgctca 1741 ggtgagcccg aaggcaggag ccgggaggca ctcctcccaa acactccact cagaccataa 1801 agcactcctg tttcactctg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //