LOCUS BC000463 1715 bp mRNA linear HUM 16-SEP-2003 DEFINITION Homo sapiens splicing factor 3b, subunit 3, 130kDa, mRNA (cDNA clone IMAGE:2822705), complete cds. ACCESSION BC000463 VERSION BC000463.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1715) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1715) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 1 Row: j Column: 3 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1715 /db_xref="H-InvDB:HIT000029648" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:2822705" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1715 /gene="SF3B3" /gene_synonym="KIAA0017" /gene_synonym="RSE1" /gene_synonym="SAP130" /gene_synonym="SF3b130" /db_xref="GeneID:23450" /db_xref="MIM:605592" CDS 10..1209 /gene="SF3B3" /gene_synonym="KIAA0017" /gene_synonym="RSE1" /gene_synonym="SAP130" /gene_synonym="SF3b130" /codon_start=1 /product="SF3B3 protein" /protein_id="AAH00463.1" /db_xref="GeneID:23450" /db_xref="MIM:605592" /translation="MAEEMVEAAGEDERELAAEMAAAFLNENLPESIFGAPKAGNGQW ASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNIGEDWYVLVGVAKDLILNPRSV AGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLL RKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTA SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMN YHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEH PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLED IRTRYAF" misc_feature 133..1032 /gene="SF3B3" /gene_synonym="KIAA0017" /gene_synonym="RSE1" /gene_synonym="SAP130" /gene_synonym="SF3b130" /note="CPSF_A; Region: CPSF A subunit region. This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding" /db_xref="CDD:pfam03178" BASE COUNT 437 a 418 c 436 g 424 t ORIGIN 1 ggcacaggga tggcagagga aatggtggaa gcagcagggg aggatgagcg ggagctggcc 61 gcagagatgg cagcagcatt cctcaatgaa aacctccctg aatccatctt tggagctccc 121 aaggctggca atgggcagtg ggcctctgtg atccgagtga tgaatcccat tcaagggaac 181 acactggacc ttgtccagct ggaacagaat gaggcagctt ttagtgtggc tgtgtgcagg 241 ttttccaaca ttggtgaaga ctggtatgtg ctggtgggtg tggccaagga cctgatacta 301 aacccccgat ctgtggcagg gggcttcgtc tatacttaca agcttgtgaa caatggggaa 361 aaactggagt ttttgcacaa gactcctgtg gaagaggtcc ctgctgctat tgccccattc 421 caggggaggg tgttgattgg tgtggggaag ctgttgcgtg tctatgacct gggaaagaag 481 aagttactcc gaaaatgtga gaataagcat attgccaatt atatctctgg gatccagact 541 atcggacata gggtaattgt atctgatgtc caagaaagtt tcatctgggt tcgctacaag 601 cgtaatgaaa accagcttat catctttgct gatgatacct acccccgatg ggtcactaca 661 gccagcctcc tggactatga cactgtggct ggggcagaca agtttggcaa catatgtgtg 721 gtgaggctcc cacctaacac caatgatgaa gtagatgagg atcctacagg aaacaaagcc 781 ctgtgggacc gtggcttgct caatggggcc tcccagaagg cagaggtgat catgaactac 841 catgtcgggg agacggtgct gtccttgcag aagaccacgc tgatccctgg aggctcagaa 901 tcacttgtct ataccacctt gtctggagga attggcatcc ttgtgccatt cacgtcccat 961 gaggaccatg acttcttcca gcatgtggaa atgcacctgc ggtctgaaca tccccctctc 1021 tgtgggcggg accacctcag ctttcgctcc tactacttcc ctgtgaagaa tgtgattgat 1081 ggagacctct gtgagcagtt caattccatg gaacccaaca aacaaaagaa cgtctctgaa 1141 gaactggacc gaaccccacc cgaagtgtcc aagaaactcg aggatatccg gacccgctac 1201 gccttctgag ccctcctttc ccggtggggc ttgccagaga ctgtgtgttt tgtttccccc 1261 accaccatca ctgccacctg gcttctgcca tgtggcagga gggtgactgg ataattaaga 1321 ctgcattatg aaagtcaaca gctctttccc ctcagctctt ctcctggaat gactggcttc 1381 ccctcaaatt ggcactgaga tttgctacac ttctccccac ctggtacatg atacatgacc 1441 ccaggttcca gtgtagaacc tgagtccccc attccccaaa gccatccctg cattgatatg 1501 tcttgactct cctgtctact tttgcacaca cccttaattt ttaattggtt ttcttgtaaa 1561 tacagttttg tacaatgtta tctctgtggg aggaaggagg caggctgtgg tgggactggg 1621 tagggtatag tatcactcct gagttccact gctctagaat ctaaccagaa atagaaacct 1681 agtttttaaa aaaaaaaaaa aaaaaaaaaa aaaaa //