LOCUS AL117233 2811 bp mRNA linear HUM 15-OCT-2008
DEFINITION Novel human gene mapping to chomosome 1.
ACCESSION AL117233
VERSION AL117233.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2811)
AUTHORS Rhodes S., Huckle E.
JOURNAL Submitted (06-SEP-1999) to the INSDC. E-mail contact:
humquery@sanger.ac.uk
COMMENT This cDNA sequence was assembled from public domain ESTs and single
pass sequencing reads from expressed DNA templates, aligned to the
genomic DNA sequence from the bacterial clone 97P20 (AL031297).
The EST sequences listed match this sequence with an identity
of at least 95% between the coordinates shown.
Further information can be found at
http://www.sanger.ac.uk/HGP/Chr1/
Experimentally determined gene.
Sanger Centre name : dJ97P20.C1.1
FEATURES Location/Qualifiers
source 1..2811
/db_xref="H-InvDB:HIT000250267"
/organism="Homo sapiens"
/chromosome="1"
/map="1q23-1q24.3"
/mol_type="mRNA"
/db_xref="taxon:9606"
exon 1..55
/number=1
misc_feature join(52..90,91..270,269..522)
/note="matches EST AA744236 from clone IMAGE:1282880"
exon 56..270
/number=2
misc_feature 92..234
/note="matches EST AA852285 from clone NHTBCae11g07"
misc_feature join(105..270,269..434)
/note="matches EST AA767868 from clone IMAGE:1316993"
CDS 106..2172
/product="hypothetical protein"
/db_xref="GOA:Q8IZE3"
/db_xref="H-InvDB:HIT000250267.15"
/db_xref="HGNC:HGNC:19285"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR011989"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR021133"
/db_xref="UniProtKB/Swiss-Prot:Q8IZE3"
/protein_id="CAB55300.1"
/translation="MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKR
ENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCA
GIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSI
QSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQ
QTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLD
RVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALF
QSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSI
VAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEGDPFSQPIKFPIN
GLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPENQTVNIQIWPREPCDDVKSQCTT
LDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSGEQKPIPALLSLTEESMPWKSSLP
QKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFTIQVKKKPVKDPEMDWFAD
MIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAEITEGEAEGWEEEGELN
WEDNNW"
exon 271..456
/number=3
exon 457..570
/number=4
exon 571..627
/number=5
exon 628..730
/number=6
exon 731..842
/number=7
exon 843..920
/number=8
exon 921..1060
/number=9
misc_feature 931..1201
/note="matches EST H65154 from clone 238588"
exon 1061..1245
/number=10
misc_feature complement(1091..1203)
/note="matches EST T08160 from clone HIBAC96"
misc_feature join(1220..1552,1551..1579)
/note="matches EST N41302 from clone 257353"
exon 1246..1417
/number=11
misc_feature complement(1379..1891)
/note="matches EST W26641"
misc_feature 1380..1645
/note="matches EST AA255775 from clone 682223"
misc_feature 1416..1457
/note="matches EST T88854 from clone 115530"
exon 1418..2112
/number=12
misc_feature 1529..1878
/note="matches EST AA410811 from clone 724367"
misc_feature 1878..2133
/note="matches EST AA355878"
misc_feature 1914..2049
/note="matches EST N77298 from clone 245483"
misc_feature 2111..2302
/note="matches EST AI041817 from clone IMAGE:1667702"
misc_feature 2111..2223
/note="matches EST AA861936 from clone IMAGE:1402737"
misc_feature 2111..2324
/note="matches EST AI040321 from clone IMAGE:1667606"
misc_feature 2111..2250
/note="matches EST AI435610 from clone IMAGE:2124875"
exon 2113..2811
/number=13
misc_feature 2120..2679
/note="matches EST AA479491 from clone 754292"
misc_feature join(2186..2388,2446..2475)
/note="matches EST R28098 from clone 133899"
misc_feature complement(2205..2657)
/note="matches EST AI459744 from clone IMAGE:1955569"
misc_feature complement(2244..2796)
/note="matches EST AA767370 from clone IMAGE:1301914"
misc_feature complement(2255..2798)
/note="matches EST AA479494 from clone 754294"
misc_feature complement(2258..2796)
/note="matches EST AI458463 from clone IMAGE:2149611"
misc_feature complement(2293..2786)
/note="matches EST AI657137 from clone IMAGE:2248212"
misc_feature complement(join(2293..2537,2532..2809))
/note="matches EST AA742445 from clone IMAGE:1257345"
misc_feature complement(2305..2751)
/note="matches EST AI694251 from clone IMAGE:2327833"
misc_feature complement(2325..2796)
/note="matches EST AI567424 from clone IMAGE:2169867"
misc_feature complement(2345..2796)
/note="matches EST AI493008 from clone IMAGE:2030055"
misc_feature complement(2356..2795)
/note="matches EST AI275828 from clone IMAGE:1990116"
misc_feature complement(2384..2796)
/note="matches EST AI825240 from clone IMAGE:2305853"
misc_feature complement(2395..2811)
/note="matches EST AI077524 from clone IMAGE:1659806"
misc_feature 2425..2739
/note="matches EST AA879276 from clone IMAGE:1253480"
misc_feature 2425..2796
/note="matches EST AA888734 from clone IMAGE:1253214"
misc_feature complement(2437..2806)
/note="matches EST AI283918 from clone IMAGE:1960228"
misc_feature 2530..2805
/note="matches EST D79972"
misc_feature complement(2546..2796)
/note="matches EST AA781775 from clone 1360508"
misc_feature 2621..2811
/note="matches EST AA913398 from clone IMAGE:1541695"
/note="matches EST AA913852 from clone IMAGE:1541695"
BASE COUNT 797 a 591 c 640 g 783 t
ORIGIN
1 caacagggta ccagagccaa gaccctcggc ctcctccccc gccgccttcc tgcagatctg
61 cttggctttg aggaagagtg gcagtactgc ctcactgcat aagggatggg atcagagaac
121 agtgctttaa agagctatac actgagagaa ccaccattta ccttaccctc tggacttgct
181 gtttatcccg ctgtactgca agatggcaaa tttgcttcag tttttgtgta taagagagaa
241 aatgaagaca aggttaataa agctgccaag catttgaaga cacttcgtca cccttgcttg
301 ctaagatttt tatcttgtac tgtggaagcg gatggcattc atcttgtcac tgagcgagta
361 cagcccctgg aagtggcttt ggaaacattg tcttctgcag aggtctgtgc tgggatctat
421 gacatattgc tggctcttat cttccttcat gacagaggac acctaacaca caataatgtc
481 tgtttatcat ctgtgtttgt gagtgaagat ggacactgga agctaggagg aatggaaact
541 gtttgtaaag tttctcaggc cacaccagag tttctgagga gtattcagtc aataagagac
601 ccagcatcta tccctcctga agagatgtct ccagaattca caactctccc agagtgtcat
661 ggacatgccc gggatgcctt ttcatttgga acattggtgg aaagtttgct cacaatctta
721 aatgaacagg tttcagcgga tgttctctcc agctttcaac agaccttgca ctcaactttg
781 ctgaatccca ttccaaaatg tcggccagcg ctctgcacct tactatctca tgacttcttc
841 agaaatgatt ttctggaagt tgtgaatttc ttgaaaagtt taacattgaa gagtgaagag
901 gagaaaacgg aattctttaa atttctgctg gacagagtca gctgcttgtc agaggaattg
961 atagcttcaa ggttggtgcc tcttctgctt aatcagttgg tgtttgcaga gccagtggct
1021 gttaagagtt ttcttcctta tctgcttggc cccaaaaaag atcatgcgca gggagaaact
1081 ccttgcttgc tctcaccagc cctgttccag tcacgggtga tccccgtgct tctccagttg
1141 tttgaagttc atgaagagca tgtgcggatg gtgctgctgt ctcacatcga ggcctacgtg
1201 gagcacttca ctcaggagca gctgaagaaa gtcatcttgc cacaggtttt gctgggcctg
1261 cgtgatacta gcgattccat tgtggcaatt actctgcata gcctagcagt gctggtctct
1321 ctgcttggac cagaggtggt tgtgggagga gaacgaacca agatcttcaa acgcactgcc
1381 ccaagtttta ctaaaaatac tgacctttct ctagaaggcg atccattttc tcagcctatt
1441 aaatttccca taaatggact ctcagatgta aaaaatactt cggaggacag tgaaaacttc
1501 ccatcaagtt ctaaaaagtc tgaggagtgg cctgactgga gtgaacctga ggagcctgaa
1561 aatcaaactg tcaacataca gatttggcct agagaacctt gtgatgatgt caagtcccag
1621 tgcactacct tggatgtgga agagtcatct tgggatgact gcgagcccag cagcttagat
1681 actaaagtaa acccaggagg tggaatcact gctacaaaac ctgttacctc aggggagcag
1741 aagcctattc ctgctttgct ttcactcact gaagagtcta tgccttggaa atcaagctta
1801 ccccaaaaga ttagccttgt acaaaggggg gatgacgcag accaaatcga gccgccaaaa
1861 gtgtcatcac aagaaaggcc ccttaaggtt ccatcagaac ttggtttagg agaggaattc
1921 accattcaag taaaaaagaa gccagtaaaa gatcctgaga tggattggtt tgctgatatg
1981 atcccagaaa ttaagccttc tgctgctttt cttatattac ctgaactgag gacagaaatg
2041 gtcccaaaaa aggatgatgt ctccccagtg atgcagtttt cctcaaaatt tgctgcagca
2101 gaaattactg agggagaggc tgaaggctgg gaagaagaag gggagctgaa ctgggaagat
2161 aataactggt gacaatagat gtgagttaaa ctttaggaaa aaggattccc tttttttaaa
2221 aaaaatcaat acctcaaaag caggctttgg gacaagaaaa ccccaaagtg gcctgctttt
2281 cccatcccag gagctcatta tccagtctgt gccaactgaa gtaggagact gactgtgagt
2341 gctggctaaa agccctgggt ggtgaggctc acagtactgg tttccaggag gaagagcctt
2401 tgtgcatttg actgaggcca gtttctatga agagcaagta gctgaggaga ggtcgaattt
2461 actgcttttt ccaggacaat tctggaagta aagaaaatgt aattcaagct ggttagctta
2521 attttgtgcc attctttaac ataagagtaa gctctattat gaaatacaac tttaaaaaat
2581 tttagctata aattatataa atgattttaa attgctgagg tttccttagg cagcttattt
2641 atttgtttac agttagacta tctgagtaaa tggttctttg tggacctagg cagttcctga
2701 ctgttccaca tgtagtacat tgtaccaaag ttcttaataa gaatattccc cacaatcctg
2761 ttctctaaat gtcaaataaa gattattttc actagattca actttacaaa a
//