LOCUS AK301516 2400 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58545 complete cds, highly similar to RCC1
and BTB domain-containing protein 2.
ACCESSION AK301516
VERSION AK301516.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2400)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2400
/clone="SYNOV4008615"
/clone_lib="SYNOV4"
/db_xref="H-InvDB:HIT000496140"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatoid
arthritis"
CDS 192..1862
/codon_start=1
/note="highly similar to RCC1 and BTB domain-containing
protein 2"
/protein_id="BAG63022.1"
/transl_table=1
/translation="MSALPRDLELSNPREKLTKPVQATLSSLKMLDVGKWPIFSLCSE
EELQLIRQACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNG
KKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVI
EVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACG
QMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLV
LTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGG
HVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKRE
FDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDIVEMSEFSYPVYRAFL
EYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYD
AQDLEEFCFRFCINHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN"
BASE COUNT 664 a 517 c 568 g 651 t
ORIGIN
1 gcagtaaccg ctacccagga ggcggagcgg acaaggctcc ggcctgcgag gagtcacatt
61 aactttgctc tagaagacaa ctttacaagg atctaaaagg aacaggatta aagatgactg
121 aatactgggt tccagaaatt taaaacaatc agcttagcaa atcatatatt cttctgtgga
181 gctgagaatt gatgtccgct cttccccgtg atttggaact ttccaatccc agagaaaagt
241 tgacaaagcc agtacaggct actctgtcat ctttgaagat gttagatgtg ggaaagtggc
301 caattttttc cctttgttct gaagaagaac tacagttaat tcgtcaggct tgtgtctttg
361 gcagtgctgg caatgaagtt ttatacacta cagtaaatga tgagattttt gtgcttggca
421 caaactgctg tggctgtttg gggttaggtg acgtccagag caccattgaa cctcggagac
481 tggattcttt aaatggcaaa aaaatagcct gcctcagcta tgggagtggt ccacatattg
541 tccttgcaac aacagaagga gaagtcttta cctggggtca taatgcttat agccagctgg
601 gcaatgggac aactaatcat ggtttagtgc cctgtcatat ctctactaat ctgtcaaaca
661 aacaagtcat tgaagttgcc tgtgggtctt accattcttt ggtgctaaca tctgatggag
721 aggtatttgc ctggggttat aataactctg ggcaggtagg atctggatca acagttaatc
781 agccaatccc tcgaagagtc actggctgcc tacaaaataa agtagttgtg accatagcat
841 gtgggcagat gtgctgcatg gcagtagtag acacggggga ggtctatgtc tggggttaca
901 acggaaacgg gcagcttgga ctcggcaaca gtggcaacca gccaacccct tgcagagtgg
961 cagctttgca aggcatccgt gtccagaggg tcgcctgtgg ctacgcacac acattagtat
1021 taacagatga aggccaagtg tatgcttggg gcgccaattc ttatgggcag ttgggcactg
1081 gcaataaaag caaccagtcc tatcctactc ctgtcactgt ggaaaaggac aggattatcg
1141 agattgcagc ctgtcactcc acacacacgt ctgcggccaa gacgcagggt gggcacgtgt
1201 acatgtgggg ccagtgccgg ggtcagtccg tgatcctccc gcacctcacc cacttctcct
1261 gcactgacga cgtgtttgcc tgctttgcca cgcccgccgt cacgtggcgc ctcctctccg
1321 tggaacctga tgaccacctc acagtggctg agtcactgaa gagggaattt gacaacccgg
1381 acactgcaga cctgaagttt ctagttgatg gaaagtacat ttatgcacat aaagtccttc
1441 tcaagattcg atgtgagcat tttcgttcgt cattggaaga taacgaggat gatattgtag
1501 aaatgagtga attttcatat cctgtttacc gggccttcct ggaataccta tacacagaca
1561 gcatcagcct ttctcctgag gaggcagtag gactgctaga cttggctaca ttttatagag
1621 aaaatcgttt gaaaaagctc tgccaacaaa ctatcaagca aggcatctgc gaggagaatg
1681 ccatcgctct gctctcggct gcagtgaagt atgatgcaca ggatttagaa gaattctgct
1741 tcaggttttg cataaaccat ctgactgtag taacacaaac atcaggtttt gcagaaatgg
1801 accatgatct cctgaagaac tttatcagca aagcaagcag agttggagcc tttaaaaatt
1861 gatcccatct gcaggaaagt ttttgagcct ttccatttcc cctgcaaaag ccagagatga
1921 atcacttctc tttaattaat agtatgtatg atgagctatg tttggctgag tacttgtaac
1981 tgtcagaaga aggatggtgg tgagtggtct ttgtctgcct aaacccagag tttatgtaga
2041 aagcattgaa tgttctgatc agatgtgact aaggtcaagg aaaaaaaatt gaaatatctt
2101 atttaccatt tcctcttttt gagtcactta aattggacac ctttggtacc ctggtctcag
2161 tatatgctat tctggcccaa atgttccatt attcagctgg ctgataccac atagatagct
2221 tgacaaggag tgctgtctgt ccttaccaca ttttcagcac tcagcacagt gccttgtgta
2281 taataggcac tcaatttatt ataaatcttc agtatgtcct gagaacagct ttagtcatgg
2341 aatactggga gaaggaataa ctttcacaaa ataaacttaa aacagcctgt aattattgag
//