LOCUS AK299699 2101 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58491 complete cds, highly similar to Homo
sapiens hypoxia inducible factor 3, alpha subunit (HIF3A),
transcript variant 3, mRNA.
ACCESSION AK299699
VERSION AK299699.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2101)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2101
/clone="OCBBF2029649"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494323"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 31..1869
/codon_start=1
/note="highly similar to Homo sapiens hypoxia inducible
factor 3, alpha subunit (HIF3A), transcript variant 3,
mRNA"
/protein_id="BAG61601.1"
/transl_table=1
/translation="MLPMPSGRPRSCARKSPGMRPAAGAARRPRCCTSWLTRCPSPAA
SAPTWTRPLSCASPSATCACTASAPQLELIGHSIFDFIHPCDQEELQDALTPQQTLSR
RKVEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPD
SEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDL
IGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGR
GPQSESIVCVHFLISRVEETGVVLSLEQTEQHSRRPIQRGAPSQKDTPNPGDSLDTPG
PRILAFLHPPSLSEAALAADPRRFCSPDLRRLLGPILDGASVAATPSTPLATRHPQSP
LSADLPDELPVGTENVHRLFTSGKDTEAVETDLDIAQDADALDLEMLAPYISMDDDFQ
LNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALEPSLLPRWGSDPRLSCSSPSRGDP
SASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSPSPEHENFLLFPLSLSFLLTGG
PAPGSLQDPSTPLLNLNEPLGFHFVTQSGVQWHKHSSPQPRPPGLK"
BASE COUNT 416 a 722 c 566 g 397 t
ORIGIN
1 cttttctctt tcccgagtca ccaccagtga atgctgccca tgccctcagg tcgaccacgg
61 agctgcgcaa ggaaaagtcc cgggatgcgg cccgcagccg gcgcagccag gagaccgagg
121 tgctgtacca gctggctcac acgctgccct tcgcccgcgg cgtcagcgcc cacctggaca
181 aggcctctat catgcgcctc accatcagct acctgcgcat gcaccgcctc tgcgccgcag
241 ctggagctca ttggacacag catctttgat ttcatccacc cctgtgacca agaggagctt
301 caggacgccc tgacccccca gcagaccctg tccaggagga aggtggaggc ccccacggag
361 cggtgcttct ccttgcgcat gaagagtaca ctcaccagcc gcgggcgcac cctcaacctc
421 aaggcggcca cctggaaggt gctgaactgc tctggacata tgagggccta caagccacct
481 gcgcagactt ctccagctgg gagccctgac tcagagcccc cgctgcagtg cctggtgctc
541 atctgcgaag ccatccccca cccaggcagc ctggagcccc cactgggccg aggggccttc
601 ctcagccgcc acagcctgga catgaagttc acctactgtg acgacaggat tgcagaagtg
661 gctggctata gtcccgatga cctgatcggc tgttccgcct acgagtacat ccacgcgctg
721 gactccgacg cggtcagcaa gagcatccac accttgctga gcaagggcca ggcagtaaca
781 gggcagtatc gcttcctggc ccggagtggt ggctacctgt ggacccagac ccaggccaca
841 gtggtgtcag ggggacgggg cccccagtcg gagagtatcg tctgtgtcca ttttttaatc
901 agccgggtgg aagagaccgg agtggtgctg tccctggagc aaacggagca acattctcgc
961 agacccattc agcggggcgc cccctctcag aaggacaccc ctaaccctgg ggacagcctt
1021 gacacccctg gcccccggat ccttgccttc ctgcacccgc cttccctgag cgaggctgcc
1081 ctggccgctg acccccgccg tttctgcagc cctgacctcc gtcgcctcct gggacccatc
1141 ctggatgggg cttcagtagc agccactccc agcaccccgc tggccacacg gcacccccaa
1201 agtcctcttt cggctgatct cccagatgaa ctacctgtgg gcaccgagaa tgtgcacaga
1261 ctcttcacct ccgggaaaga cactgaggca gtggagacag atttagatat agctcaggat
1321 gctgatgctc tggatttgga gatgctggcc ccctacatct ccatggatga tgacttccag
1381 ctcaacgcca gcgagcagct acccagggcc taccacagac ctctgggggc tgtcccccgg
1441 ccccgtgctc ggagcttcca tggcctgtca cctccagccc ttgagccctc cctgctaccc
1501 cgctggggga gtgacccccg gctgagctgc tccagccctt ccagagggga cccctcagca
1561 tcctctccca tggctggggc tcggaagagg accctggccc agagctcaga ggacgaggac
1621 gagggagtgg agctgctggg agtgagacct cccaaaaggt cccccagccc agaacacgaa
1681 aactttctgc tctttcctct cagcctgagt ttccttctga caggaggacc agccccaggg
1741 agcctgcagg accccagcac cccactcctg aacctgaatg agcccctggg ttttcacttt
1801 gtcacccagt ctggagtgca gtggcacaaa cacagctcac cgcagcctcg acctcctggg
1861 ctcaagtgat cctcctactt cagctcccac aagtagctgg gactgcagct atgtgccatc
1921 atgcctggct gatgtttata tgttttgtag agacgaggtt tcaccatgtt gcccaggctg
1981 gtcttgaact cctgagttca agcgatccac ctgccttggc ctcccaaagt gctgggatta
2041 ctggtatgaa ccaccacgcc cgacagtaaa tatgttttga atgaataaac tctcataaat
2101 g
//