LOCUS AK299479 2377 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54428 complete cds, highly similar to SLIT
and NTRK-like protein 1 precursor.
ACCESSION AK299479
VERSION AK299479.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2377)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2377
/clone="OCBBF1000248"
/clone_lib="OCBBF1"
/db_xref="H-InvDB:HIT000494103"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 28..2118
/codon_start=1
/note="highly similar to SLIT and NTRK-like protein 1
precursor"
/protein_id="BAG61443.1"
/transl_table=1
/translation="MLLWILLLETSLCFAAGNVTGDVCKKKICSCNEIEGDLHVDCEK
KGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVPGAF
LGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLI
LNDNLISTLPANVLQYVPITHLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTC
DLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPA
QEETFAPGPLPTPFKTNGQEDHATPGSAPNGGTKIPGNWQIKIRPTAAIATGSSRNKP
LANSLPCPGGCSCDHIPGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRK
SHFVDYKNLILLDLGNNNIATVENNTFKNLLDLRWLYMDSNYLDTLSREKFAGLQNLE
YLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGVSLSKLSLHNNYFMY
LPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCETPVNFFR
KDFMLLSNDEICPQLYARISPTLTSHSKNSTGLAETGTHSNSYLDTSRVSISVLVPGL
LLVFVTSAFTVVGMLVFILRNRKRSKRRDANSSASEINSLQTVCDSSYWHNGPYNADG
AHRVYDCGSHSLSD"
BASE COUNT 596 a 658 c 590 g 533 t
ORIGIN
1 ttcggggatg aattgctcgc tttaaaaatg ctgctttgga ttctgttgct ggagacgtct
61 ctttgttttg ccgctggaaa cgttacaggg gacgtttgca aaaagaagat ctgttcctgc
121 aatgagatag aaggggacct acacgtagac tgtgaaaaaa agggcttcac aagtctgcag
181 cgtttcactg ccccgacttc ccagttttac catttatttc tgcatggcaa ttccctcact
241 cgacttttcc ctaatgagtt cgctaacttt tataatgcgg ttagtttgca catggaaaac
301 aatggcttgc atgaaatcgt tccgggggct tttctggggc tgcagctggt gaaaaggctg
361 cacatcaaca acaacaagat caagtctttt cgaaagcaga cttttctggg gctggacgat
421 ctggaatatc tccaggctga ttttaattta ttacgagata tagacccggg ggccttccag
481 gacttgaaca agctggaggt gctcatttta aatgacaatc tcatcagcac cctacctgcc
541 aacgtgctcc agtatgtgcc catcacccac ctcgacctcc ggggtaacag gctgaaaacg
601 ctgccctatg aggaggtctt ggagcaaatc cctggtattg cggagatcct gctagaggat
661 aacccttggg actgcacctg tgatctgctc tccctgaaag aatggctgga aaacattccc
721 aagaatgccc tgatcggccg agtggtctgc gaagccccca ccagactgca gggtaaagac
781 ctcaatgaaa ccaccgaaca ggacttgtgt cctttgaaaa accgagtgga ttctagtctc
841 ccggcgcccc ctgcccaaga agagaccttt gctcctggac ccctgccaac tcctttcaag
901 acaaatgggc aagaggatca tgccacacca gggtctgctc caaacggagg tacaaagatc
961 ccaggcaact ggcagatcaa aatcagaccc acagcagcga tagcgacggg tagctccagg
1021 aacaaaccct tagctaacag tttaccctgc cctgggggct gcagctgcga ccacatccca
1081 gggtcgggtt taaagatgaa ctgcaacaac aggaacgtga gcagcttggc tgatttgaag
1141 cccaagctct ctaacgtgca ggagcttttc ctacgagata acaagatcca cagcatccga
1201 aaatcgcact ttgtggatta caagaacctc attctgttgg atctgggcaa caataacatc
1261 gctactgtag agaacaacac tttcaagaac cttttggacc tcaggtggct atacatggat
1321 agcaattacc tggacacgct gtcccgggag aaattcgcgg ggctgcaaaa cctagagtac
1381 ctgaacgtgg agtacaacgc tatccagctc atcctcccgg gcactttcaa tgccatgccc
1441 aaactgagga tcctcattct caacaacaac ctgctgaggt ccctgcctgt ggacgtgttc
1501 gctggggtct cgctctctaa actcagcctg cacaacaatt acttcatgta cctcccggtg
1561 gcaggggtgc tggaccagtt aacctccatc atccagatag acctccacgg aaacccctgg
1621 gagtgctcct gcacaattgt gcctttcaag cagtgggcag aacgcttggg ttccgaagtg
1681 ctgatgagcg acctcaagtg tgagacgccg gtgaacttct ttagaaagga tttcatgctc
1741 ctctccaatg acgagatctg ccctcagctg tacgctagga tctcgcccac gttaacttcg
1801 cacagtaaaa acagcactgg gttggcggag accgggacgc actccaactc ctacctagac
1861 accagcaggg tgtccatctc ggtgttggtc ccgggactgc tgctggtgtt tgtcacctcc
1921 gccttcaccg tggtgggcat gctcgtgttt atcctgagga accgaaagcg gtccaagaga
1981 cgagatgcca actcctccgc gtccgagatt aattccctac agacagtctg tgactcttcc
2041 tactggcaca atgggcctta caacgcagat ggggcccaca gagtgtatga ctgtggctct
2101 cactcgctct cagactaaga ccccaacccc aataggggag ggcagaggga aggcgataca
2161 tccttcccca ccgcaggcac cccgggggct ggaggggcgt gtacccaaat ccccgcgcca
2221 tcagcctgga tgggcataag tagataaata actgtgagct cgcacaaccg aaagggcctg
2281 accccttact tagctccctc cttgaaacaa agagcagact gtggagagct gggagagcgc
2341 agccagctcg ctctttgctg agagcccctt ttgacag
//